Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Agave tequilana cultivar:Ate-50-Nuc

ABSTRACT: Agave tequilana Ate-50-Nuc Standard Draft genome sequencing

PROVIDER: PRJNA566715 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10665707_subreads.fastq.gz	Fastqsanger.gz
	SRR10665708_subreads.fastq.gz	Fastqsanger.gz
	SRR10665709_subreads.fastq.gz	Fastqsanger.gz
	SRR10665710_subreads.fastq.gz	Fastqsanger.gz
	SRR10665711_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 48

Similar Datasets

Agave tequilana

Project description:Agave tequilana Genome sequencing

| PRJNA253745 | ENA

Agave tequilana

Project description:Agave tequilana Organism overview

| PRJNA273655 | ENA

Agave tequilana

Project description:Agave tequilana Raw sequence reads

| PRJNA507288 | ENA

Agave tequilana strain:Weber azul

Project description:Agave tequilana strain:Weber azul Transcriptome or Gene expression

| PRJNA193469 | ENA

Agave strain vs wine strain

Project description:We studied transcriptional responses comparing an Agave strain ITD00185 with a wine strain T73 in a synthetic agave must

2017-03-01 | GSE95507 | GEO

Untargeted metabolomics study of the effects of phyllosphere synthetic communities on agave tequilana

Project description:We performed an untargeted metabolomic analysis on agave tequilana leaves treated with two phyllosphere synthetic microbial communities (PSMC) using LC-HR-MS/MS. Data-Dependent Acquisition was employed under positive ionization mode. Three cohorts were included; a) non-treated plants; b) treated plants with PFCS (a type of PSMC), and; c) treated plants with PFCT (a type of PSMC). Metabolites were extracted with a solvent mixture of acetonitrile:methanol:ethyl acetate (1:1:1).

2022-04-29 | MSV000089335 | MassIVE

Trametes cinnabarina strain:CIRM-BRFM 50 | isolate:CIRM-BRFM 50

Project description:Pycnoporus cinnabarinus CIRM-BRFM 50 Standard Draft genome sequencing

| PRJNA331354 | ENA

(Agave angustifolia x Agave amaniensis) x Agave amaniensis

Project description:(Agave angustifolia x Agave amaniensis) x Agave amaniensis overview

| PRJNA629034 | ENA

(Agave angustifolia x Agave amaniensis) x Agave amaniensis

Project description:(Agave angustifolia x Agave amaniensis) x Agave amaniensis Raw sequence reads

| PRJNA527342 | ENA

De novo transcriptome assembly of drought tolerant CAM plants, Agave deserti and Agave tequilana.

Project description:BACKGROUND:Agaves are succulent monocotyledonous plants native to xeric environments of North America. Because of their adaptations to their environment, including crassulacean acid metabolism (CAM, a water-efficient form of photosynthesis), and existing technologies for ethanol production, agaves have gained attention both as potential lignocellulosic bioenergy feedstocks and models for exploring plant responses to abiotic stress. However, the lack of comprehensive Agave sequence datasets limits the scope of investigations into the molecular-genetic basis of Agave traits. RESULTS:Here, we present comprehensive, high quality de novo transcriptome assemblies of two Agave species, A. tequilana and A. deserti, built from short-read RNA-seq data. Our analyses support completeness and accuracy of the de novo transcriptome assemblies, with each species having a minimum of approximately 35,000 protein-coding genes. Comparison of agave proteomes to those of additional plant species identifies biological functions of gene families displaying sequence divergence in agave species. Additionally, a focus on the transcriptomics of the A. deserti juvenile leaf confirms evolutionary conservation of monocotyledonous leaf physiology and development along the proximal-distal axis. CONCLUSIONS:Our work presents a comprehensive transcriptome resource for two Agave species and provides insight into their biology and physiology. These resources are a foundation for further investigation of agave biology and their improvement for bioenergy development.

| S-EPMC3765226 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data