Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bombus bifarius isolate:JDL3187

ABSTRACT: Bombus bifarius isolate:JDL3187 Genome sequencing and assembly

PROVIDER: PRJNA591177 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	JAAQOX01.dat.gz	Other
	JAAQOX01.fasta.gz	Fasta.gz
	JAAQOX01.master.dat	Other
	SRR11404314_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 7

Similar Datasets

MiRNAs in the genomes of Bombus terrestris and Bombus impatiens

Project description:Our aims in this study were: 1) to identify the miRNAs of the bumble bees Bombus terrestris and B. impatiens; 2) to compare the total numbers of miRNAs between both bumble bee species and between them and the honey bee, Apis mellifera; and 3) to test whether the sequences and expression patterns of miRNAs were conserved between species. To investigate each of these aims we used miRNA-seq (deep sequencing of miRNA-enriched libraries) in B. terrestris, and bioinformatics prediction programs to identify miRNAs in both Bombus species. We identified 131 miRNAs in B. terrestris, and 114 in B. impatiens; of these, 17 were new miRNAs that had not previously been sequenced in any species. We found a striking level of difference in the miRNAs present between Bombus and A. mellifera, with 103 miRNAs in A. mellifera not being present in the genomes of the two bumble bees. miRNA profiles of Bombus terrestris at two developmental stages in larvae. This submission represents 'Bombus terrestris' component of study.

2015-03-06 | E-GEOD-64512 | biostudies-arrayexpress

MiRNAs in the genomes of Bombus terrestris and Bombus impatiens

2015-03-06 | GSE64512 | GEO

Bombus vancouverensis nearcticus isolate:JDL1245

Project description:Bombus vancouverensis nearcticus isolate:JDL1245 Genome sequencing and assembly

| PRJNA611633 | ENA

Bombus balteatus isolate:NIW-01

Project description:Bombus balteatus isolate:NIW-01 Genome sequencing and assembly

| PRJNA704506 | ENA

Conservation genomics reveals pesticide and pathogen exposure in the declining bumblebee Bombus terricola

Project description:We use high-thoughput RNA sequencing to investigate the stressors experienced by the vulnerable Bombus terricola near agricultural areas.

2021-06-25 | GSE174536 | GEO

Bombus terricola

Project description:Bombus terricola Genome sequencing and assembly

| PRJNA399520 | ENA

Bombus vosnesenskii

Project description:Bombus vosnesenskii Genome sequencing and assembly

| PRJNA611634 | ENA

Bombus ussurensis

Project description:Bombus ussurensis genome sequencing

| PRJNA470801 | ENA

Bombus impatiens

Project description:Bombus impatiens genome sequencing project

| PRJNA61101 | ENA

Costs of reproduction and their effect on age-related gene expression in Bombus terrestris queens

Project description:Our two main aims were 1) to isolate age-related changes in gene expression in queens of the eusocial bumble bee, Bombus terrestris; and 2) to determine whether experimentally increasing the costs of reproduction (by removing eggs) caused changes in age-related gene expression in these queens. To address these aims we extracted RNA from three key tissues (brain, fat body and ovary) from queens at two time points (10% and 60% mortality phases). Each of these queens had experienced one of two treatments: an egg removal (R) treatment (to increase the costs of reproduction) and an egg removal and replacement (C) treatment (to control for the effects of disturbance caused by egg removal).

2023-06-06 | GSE172422 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data