Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Colletes gigas isolate:AHSC1104

ABSTRACT: Colletes gigas isolate:AHSC1104 Genome sequencing and assembly

PROVIDER: PRJNA597580 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	WUUM01.dat.gz	Other
	WUUM01.fasta.gz	Fasta.gz
	WUUM01.master.dat	Other

Items per page:

1 - 4 of 4

Similar Datasets

Colletes gigas

Project description:Colletes gigas Genome sequencing

| PRJNA768143 | ENA

Colletes gigas

Project description:Colletes gigas overview

| PRJNA563476 | ENA

Colletes gigas

Project description:Colletes gigas Transcriptome or Gene expression

| PRJNA512939 | ENA

Colletes lacunatus isolate:bee sample Tissues

Project description:Colletes lacunatus isolate:bee sample Tissues Genome sequencing

| PRJNA566456 | ENA

Pangasianodon gigas isolate:YG-Dec2019

Project description:Pangasianodon gigas isolate:YG-Dec2019 Genome sequencing and assembly

| PRJNA593917 | ENA

Transcriptome sequencing of Pacific oyster Crassostrea gigas

Project description:Deep sequencing of mRNA from Pacific oyster Crassostrea gigas

2014-07-26 | GSE31011 | GEO

The First Draft Genome of the Plasterer Bee Colletes gigas (Hymenoptera: Colletidae: Colletes).

Project description:Despite intense interest in bees, no genomes are available for the bee family Colletidae. Colletes gigas, one of the largest species of the genus Colletes in the world, is an ideal candidate to fill this gap. Endemic to China, C. gigas has been the focus of studies on its nesting biology and pollination of the economically important oil tree Camellia oleifera, which is chemically defended. To enable deeper study of its biology, we sequenced the whole genome of C. gigas using single-molecule real-time sequencing on the Pacific Bioscience Sequel platform. In total, 40.58 G (150×) of long reads were generated and the final assembly of 326 scaffolds was 273.06 Mb with a N50 length of 8.11 Mb, which captured 94.4% complete Benchmarking Universal Single-Copy Orthologs. We predicted 11,016 protein-coding genes, of which 98.50% and 84.75% were supported by protein- and transcriptome-based evidence, respectively. In addition, we identified 26.27% of repeats and 870 noncoding RNAs. The bee phylogeny with this newly sequenced colletid genome is consistent with available results, supporting Colletidae as sister to Halictidae when Stenotritidae is not included. Gene family evolution analyses identified 9,069 gene families, of which 70 experienced significant expansions (33 families) or contractions (37 families), and it appears that olfactory receptors and carboxylesterase may be involved in specializing on and detoxifying Ca. oleifera pollen. Our high-quality draft genome for C. gigas lays the foundation for insights on the biology and behavior of this species, including its evolutionary history, nesting biology, and interactions with the plant Ca. oleifera.

| S-EPMC7313665 | biostudies-literature

miRNA of Pacific oyster Crassostrea gigas for different organs and developmental stages

Project description:miRNA sequencing of Pacific oyster Crassostrea gigas for different organs and developmental stages.

2014-07-26 | GSE31009 | GEO

Transcriptome sequencing of Pacific oyster Crassostrea gigas

Project description:Deep sequencing of mRNA from Pacific oyster Crassostrea gigas Competent larvae of Crassostrea gigas were treated with epinephrine solution, and then sampled at different time intervals. For shell damage experiment, shell were broken and then tissues were sampled at different time intervals.

2014-07-26 | E-GEOD-31011 | biostudies-arrayexpress

Crassostrea gigas isolate:BHY1A

Project description:Pacific oyster Crassostrea gigas Genome sequencing and assembly

| PRJNA534417 | ENA