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Malaciobacter mytili LMG 24559

ABSTRACT: Arcobacter mytili LMG 24559 Genome sequencing project

PROVIDER: PRJNA66823 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR7588213.fastq.gz	Fastqsanger.gz
	SRR7588214.fastq.gz	Fastqsanger.gz
	SRR7588215.fastq.gz	Fastqsanger.gz
	SRR7588215_1.fastq.gz	Fastqsanger.gz
	SRR7588215_2.fastq.gz	Fastqsanger.gz

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Transcriptome profiling reveals the EanI/R quorum sensing regulon in Pantoea ananatis LMG 2665T

Project description:Background: Pantoea ananatis LMG 2665T synthesizes and utilizes acyl homoserine lactones (AHLs) for signaling. In this strain, short chain AHLs (C4 to C8) are produced by the EanI/R quorum sensing (QS) system that is involved in pathogenicity and biofilm formation. The complete set of genes regulated by the EanI/R system in P. ananatis LMG 2665T is still not fully known. In the present study, RNA-seq was used to analyze the transcriptome profiles controlled by the EanI/R system in this strain by comparing the wild type strain and its QS mutant 2665T ean∆I/R during lag and log stages. The RNA seq data was validated by RT qPCR. Results: The results showed that the EanI/R regulon in P. ananatis LMG 2665T comprised 144 genes, constituting 3.3% of the whole transcriptome under the experimental conditions in this study. The majority of genes regulated by the EanI/R system included genes for flagella assembly, bacterial chemotaxis, pyruvate metabolism, two component system, metabolic pathways, microbial metabolism and biosynthesis of secondary metabolites. Conclusions: This is the first study to identify the EanI/R QS regulon in P. ananatis LMG 2665T. Functional analysis of genes regulated the EanI/R system in LMG 2665T could help unveil genes that play a vital role in pathogenesis and survival strategies of this pathogen.

2018-10-31 | GSE87207 | GEO

Vibrio mytili strain:CAIM 528

Project description:Vibrio mytili strain:CAIM 528 Genome sequencing

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Malaciobacter canalis strain:LMG 29148

Project description:Malaciobacter canalis strain:LMG 29148 Genome sequencing and assembly

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Malaciobacter pacificus strain:LMG 26638

Project description:Malaciobacter pacificus strain:LMG 26638 Genome sequencing and assembly

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Complete Genome Sequence of the Arcobacter mytili Type Strain LMG 24559.

Project description:Multiple Arcobacter species have been recovered from fresh and contaminated waters, marine environments, and shellfish. Arcobacter mytili was recovered in 2006 from mussels collected from the Ebro River delta in Catalonia, Spain. This study describes the complete whole-genome sequence of the A. mytili type strain LMG 24559 (=F2075T =CECT 7386T).

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