Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Welwitschia mirabilis

ABSTRACT: Welwitschia genome project

PROVIDER: PRJNA680422 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13249257_1.fastq.gz	Fastqsanger.gz
	SRR13249257_2.fastq.gz	Fastqsanger.gz
	SRR13249258_1.fastq.gz	Fastqsanger.gz
	SRR13249258_2.fastq.gz	Fastqsanger.gz
	SRR13249259_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 84

Similar Datasets

Welwitschia mirabilis

Project description:Welwitschia mirabilis Genome sequencing and assembly

| PRJNA693632 | ENA

Welwitschia mirabilis

Project description:Welwitschia mirabilis Organism overview

| PRJNA311094 | ENA

Phytophthora mirabilis

Project description:Phytophthora mirabilis genome sequencing project

| PRJNA52429 | ENA

Pseudolestes mirabilis

Project description:The 1KITE project: evolution of insects

| PRJNA274394 | ENA

Hemiphlebia mirabilis

Project description:The 1KITE project: evolution of insects

| PRJNA274393 | ENA

Project description:Welwitschia mirabilis Transcriptome Sequencing

| PRJNA503117 | ENA

Lautropia mirabilis ATCC 51599

Project description:Reference genome for the Human Microbiome Project

| PRJNA52989 | ENA

Proteus mirabilis ATCC 29906

Project description:Reference genome for the Human Microbiome Project

| PRJNA31523 | ENA

Proteus mirabilis MrpJ ChIP-seq

Project description:Proteus mirabilis is a leading cause of catheter-associated urinary tract infections (UTIs) and urolithiasis. The transcriptional regulator MrpJ inversely modulates two critical aspects of P. mirabilis UTI progression: fimbria-mediated attachment to the urinary tract, and flagella-mediated motility. Chromatin immunoprecipitation followed by high-throughput sequencing (ChIP-seq) was used for the first time in a CAUTI pathogen to probe for in vivo direct targets of MrpJ. ChIP-seq revealed 81 78 direct MrpJ targets, including genes for motility, fimbriae and a type VI secretion system (T6SS), and the putative MrpJ binding sequence ACnCnnnnnnnGnGT.

2018-08-10 | GSE96042 | GEO

Broth-cultured vs swarming-phase P. mirabilis

Project description:Swarming motility by the urinary tract pathogen Proteus mirabilis has been a long-studied, but little understood phenomenon. On agar, a P. mirabilis colony grows outward in a bullseye pattern formed by consecutive waves of rapid swarming followed by consolidation into shorter cells. To examine differential gene expression in these growth phases, a microarray, constructed based on the completed genome sequence and annotation, was undertaken. RNA from 1) broth-cultured, or 2) swarming cells was extracted to assess transcription during each of these growth states.

2010-06-07 | GSE17898 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data