Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sewage 16S rRNA gene amplicon sequencing

ABSTRACT: Sewage 16S rRNA gene amplicon sequencing Raw sequence reads

PROVIDER: PRJNA683921 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR21420700_1.fastq.gz	Fastqsanger.gz
	SRR21420700_2.fastq.gz	Fastqsanger.gz
	SRR21420701_1.fastq.gz	Fastqsanger.gz
	SRR21420701_2.fastq.gz	Fastqsanger.gz
	SRR21420702_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 294

Similar Datasets

16S rRNA amplicon sequencing

Project description:16S rRNA amplicon sequencing Raw sequence reads

| PRJNA434504 | ENA

Carrots 16S rRNA gene amplicon

Project description:Carrots 16S rRNA gene amplicon Raw sequence reads

| PRJNA476777 | ENA

Quantification of mock microbial communities with metagenomes, 16S rRNA gene amplicons and metaproteomics

Project description:In this study we developed metaproteomics based methods for quantifying taxonomic composition of microbiomes (microbial communities). We also compared metaproteomics based quantification to other quantification methods, namely metagenomics and 16S rRNA gene amplicon sequencing. The metagenomic and 16S rRNA data can be found in the European Nucleotide Archive (Study number: PRJEB19901). For the method development and comparison of the methods we analyzed three types of mock communities with all three methods. The communities contain between 28 to 32 species and strains of bacteria, archaea, eukaryotes and bacteriophage. For each community type 4 biological replicate communities were generated. All four replicates were analyzed by 16S rRNA sequencing and metaproteomics. Three replicates of each community type were analyzed with metagenomics. The "C" type communities have same cell/phage particle number for all community members (C1 to C4). The "P" type communities have the same protein content for all community members (P1 to P4). The "U" (UNEVEN) type communities cover a large range of protein amounts and cell numbers (U1 to U4). We also generated proteomic data for four pure cultures to test the specificity of the protein inference method. This data is also included in this submission.

2017-05-12 | PXD006118 | Pride

Anaerobic digester 16S rRNA amplicon

Project description:Anaerobic digesters' 16S rRNA amplicon Metagenome

| PRJNA706855 | ENA

Anaerobic fermenter 16S rRNA amplicon

Project description:Anaerobic acidogenic fermenters' 16S rRNA amplicon metagenome

| PRJNA706854 | ENA

DeepHotMicrobe: Otaniemi bacterial community 16S rRNA gene amplicon sequencing

Project description:DeepHotMicrobe: Otaniemi bacterial community 16S rRNA gene amplicon sequencing

| PRJEB35728 | ENA

16S rRNA amplicon sequencing of broiler caecal contents

Project description:16S rRNA amplicon sequencing of broiler caecal contents