Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Study of Endemic species of Korea

PROVIDER: PRJNA718412 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR14100085_1.fastq.gz	Fastqsanger.gz
	SRR14100085_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Project description:Study of Endemic species of Korea

| PRJNA718412 | ENA

Assessing Genetic Diversity of Asian Salamanders (Hynobiidae) lived in Far East Asia using Transcriptome data

Project description:Asian salamander Hynobiidae is commonly observed in the Far East Asia regions, including Korea, Japan, China, and the eastern region of Russia. In Korea, there are four Hynobiidae species known to be lived: Hynobius leechii, Hynobius quelpaertensis, Hynobius yangi, and recently reported Hynobius unisacculus. However, even H. leechii which is broadly colonized in Korea peninsula seems to have a new species candidate, which has distinctive genetic and phenotypic characteristics. Genomic resources are essential to understand the current status of these species, but due to the large size of their genomes (about 16 to 20 Gb), it is not easy to analyze. To reveal the genomic characteristics of these species, we constructed more than ten thousands of protein-coding gene sequences from multiple samples of each species, using the de novo transcriptome assembly approach from RNA-Seq data, confirming their taxonomic relationship which was reported based on mitochondrial DNA and marker genes. Also, by comparing previously reported transcriptome of Hynobius chinensis and Hynobius retardatus, lived in China and Japan, respectively, we found that Korean species have unique genetic signatures. By comparing vertebrate model organism genes, we reported Hynobidaii specific proteins. These data would be a useful resource to study other Caudata species in the future. This research was supported by the National Institute of Biological Resources, Republic of Korea, under the project "Genetic diversity of animal resources” (NIBR201703203 and NIBR201803101).

2019-12-24 | GSE137677 | GEO

Project description:Complete chloroplast genome of Silene takeshimensis (Caryophyllaceae), an endemic species in Korea

| PRJNA899663 | ENA

Project description:Complete chloroplast genome of Paraphlomis koreana (Lamiaceae), an endemic species from South Korea

| PRJNA778560 | ENA

Project description:Complete chloroplast genome of Clematis calcicola (Ranunculaceae), an endemic species from South Korea

| PRJNA886061 | ENA

Project description:The complete chloroplast genome sequence of Ligustrum foliosum (Oleaceae), a species endemic to Korea

| PRJNA876948 | ENA

Project description:Two complete chloroplast genomes of Arabis takesimana (Brassicaceae), an endemic species of Ulleungdo Island, Korea

| PRJNA905110 | ENA

Project description:First record of the complete chloroplast genome of Polygonatum infudiflorum (Asparagaceae) a species endemic to Korea

| PRJNA897089 | ENA

Transcriptomic analysis of the nickel response in roots and shoots in the nickel hyperaccumulator Leucocroton havanensis (Euphorbiaceae) endemic from Cuba.

Project description:The goal of this study was to produce a reference transcriptome for the nickel hyperaccumulator Leucocroton havanensis endemic from Cuba and use this transcriptome as a reference to identify genes responding to the presence or the absence of nickel in both roots and shoots of this species

2024-07-10 | GSE237255 | GEO

Venom proteome of Pakistani Bungarus sindanus (Sind krait)

Project description:Venom proteome investigation of Bungarus sindanus (Sind krait), an endemic krait species distributed mainly in the Sindh Province of Pakistan.

2019-06-12 | PXD014239 |

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data