Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Anthurium andraeanum

ABSTRACT: Anthurium andraeanum Transcriptome or Gene expression

PROVIDER: PRJNA721430 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR14219828_1.fastq.gz	Fastqsanger.gz
	SRR14219828_2.fastq.gz	Fastqsanger.gz
	SRR14219829_1.fastq.gz	Fastqsanger.gz
	SRR14219829_2.fastq.gz	Fastqsanger.gz
	SRR14219830_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 36

Similar Datasets

Anthurium andraeanum

Project description:Anthurium andraeanum overview

| PRJNA313111 | ENA

Transcriptome of Anthurium andraeanum under cold stress

Project description:The transcriptome of leaves from two Anthurium cultivars, Oregon (Elegang, E, cold tolerant) and Fantasy love (Menghuan, MH, cold sensitive) under cold stress were sequenced by Illumina Novaseq™ 6000. Sequencing generated a total of 129.44 Gb of raw reads and an average of 7.19 Gb of reads for each sample. The analysis showed differences of transcriptomes between the control and the cold treatment samples. We identified numerous differentially expressed genes that exhibited distinct expression patterns. These genes have known or potential roles inAnthurium cold tolerance.Therefore, we are appealing candidates for further investigation of the gene expression and associated regulatory mechanisms related to the cold stress response of A. andraeanum.

2023-05-21 | GSE232629 | GEO

Anthurium andraeanum

Project description:Anthurium andraeanum Raw sequence reads

| PRJNA428586 | ENA

Anthurium andraeanum strain:sonate

Project description:Anthurium andraeanum strain:sonate Transcriptome or Gene expression

| PRJNA241042 | ENA

Anthurium andraeanum cultivar:'Tropical'

Project description:Anthurium andraeanum cultivar:'Tropical' Transcriptome or Gene expression

| PRJNA312415 | ENA

Anthurium andraeanum cultivar:Albama

Project description:Anthurium andraeanum cultivar:Albama Raw sequence reads

| PRJNA479551 | ENA

Anthurium andraeanum cultivar:Mystral Alabama

Project description:Anthurium andraeanum cultivar:Mystral Alabama Raw sequence reads

| PRJNA360892 | ENA

De novo characterization of the Anthurium transcriptome and analysis of its digital gene expression under cold stress

Project description:Anthurium andraeanum is one of the most popular tropical flowers. In temperate and cold zones, a much greater risk of cold stress occurs in the supply of Anthurium plants. Unlike the freeze-tolerant model plants, Anthurium plants are particularly sensitive to low temperatures. Improvement of chilling tolerance in Anthurium may significantly increase its production and extend its shelf-life. To date, no previous genomic information has been reported in Anthurium plants.

2014-02-19 | E-MTAB-1955 | biostudies-arrayexpress

Anthurium amnicola

Project description:Anthurium amnicola Transcriptome or Gene expression

| PRJNA288827 | ENA

Bacterial Communities Associated with Different Anthurium andraeanum L. Plant Tissues.

Project description:Plant-associated microbes have specific beneficial functions and are considered key drivers for plant health. The bacterial community structure of healthy Anthurium andraeanum L. plants was studied by 16S rRNA gene pyrosequencing associated with different plant parts and the rhizosphere. A limited number of bacterial taxa, i.e., Sinorhizobium, Fimbriimonadales, and Gammaproteobacteria HTCC2089 were enriched in the A. andraeanum rhizosphere. Endophytes were more diverse in the roots than in the shoots, whereas all shoot endophytes were found in the roots. Streptomyces, Flavobacterium succinicans, and Asteroleplasma were only found in the roots, Variovorax paradoxus only in the stem, and Fimbriimonas 97%-OTUs only in the spathe, i.e., considered specialists, while Brevibacillus, Lachnospiraceae, Pseudomonas, and Pseudomonas pseudoalcaligenes were generalist and colonized all plant parts. The anaerobic diazotrophic bacteria Lachnospiraceae, Clostridium sp., and Clostridium bifermentans colonized the shoot system. Phylotypes belonging to Pseudomonas were detected in the rhizosphere and in the substrate (an equiproportional mixture of soil, cow manure, and peat), and dominated the endosphere. Pseudomonas included nine 97%-OTUs with different patterns of distribution and phylogenetic affiliations with different species. P. pseudoalcaligenes and P. putida dominated the shoots, but were also found in the roots and rhizosphere. P. fluorescens was present in all plant parts, while P. resinovorans, P. denitrificans, P. aeruginosa, and P. stutzeri were only detected in the substrate and rhizosphere. The composition of plant-associated bacterial communities is generally considered to be suitable as an indicator of plant health.

| S-EPMC5017810 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data