Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Photobacterium ganghwense strain:K3B

ABSTRACT: Photobacterium ganghwense strain:K3B Genome sequencing and assembly

PROVIDER: PRJNA739754 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	JAHRDW01.dat.gz	Other
	JAHRDW01.fasta.gz	Fasta.gz
	JAHRDW01.master.dat	Other
	SRR14920402_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Photobacterium marinum strain:AK15

Project description:Photobacterium marinum strain:AK15 Genome sequencing and assembly

| PRJNA176474 | ENA

Photobacterium alginatilyticum strain:P03D4

Project description:Photobacterium alginatilyticum strain:P03D4 Genome sequencing and assembly

| PRJNA507885 | ENA

Photobacterium salinisoli strain:LAM9072

Project description:Photobacterium salinisoli strain:LAM9072 Genome sequencing and assembly

| PRJNA492399 | ENA

Photobacterium halotolerans strain:MELD1

Project description:Photobacterium halotolerans strain:MELD1 Genome sequencing and assembly

| PRJNA260129 | ENA

Photobacterium leiognathi strain:JS01

Project description:Photobacterium leiognathi strain:JS01 Genome sequencing and assembly

| PRJNA413640 | ENA

Gene expression analysis of Photobacterium profundum DB110 and TW30 toxR mutant strain at 0.1 MPa and 28 MPa

Project description:Here we report the massively parallel cDNA sequencing (RNA-seq) analysis performed using high throughput sequencing of wild type (DB110) and toxR (TW30) mutant strains of the deep-sea bacterium Photobacterium profundum. ToxR is a transmembrane DNA-binding protein first discovered in Vibrio cholerae and able to regulate numerous genes involved in virulence. In P. profundum the abundance and activity of the same protein is influenced by hydrostatic pressure and is able to regulate genes in a pressure-dependent manner. To better characterize the ToxR regulon, we have compared the genes differentially expressed in response to pressure changes with those whose expression is altered between wild type and toxR mutant strains. Four samples were analyzed: DB110 strain grown at 0.1 MPa, DB110 strain grown at 28 MPa, TW30 strain grown at 0.1 MPa, TW30 strain grown at 28 MPa. Two independent coltures (replicates) were grown for each sample, RNA was extracted from each replicate and RNAs from the two replicates were pooled together to reduce biological variability. No replicates were included in experimental design.

2012-12-22 | E-GEOD-38259 | biostudies-arrayexpress

Photobacterium ganghwense strain:C2.2

Project description:Photobacterium ganghwense strain:C2.2 Genome sequencing

| PRJNA548038 | ENA

Gene expression analysis of Photobacterium profundum DB110 and TW30 toxR mutant strain at 0.1 MPa and 28 MPa

2012-12-22 | GSE38259 | GEO

Photobacterium damselae

Project description:Photobacterium damselae Genome sequencing and assembly

| PRJNA662633 | ENA

Photobacterium proteolyticum strain:13-12

Project description:Photobacterium proteolyticum strain:13-12 Genome sequencing and assembly

| PRJNA343696 | ENA