Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Schima superba

ABSTRACT: Schima superba Genome sequencing and assembly

PROVIDER: PRJNA743231 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR15058748.fastq.gz	Fastqsanger.gz

Items per page:

1 - 1 of 1

Similar Datasets

Schima superba isolate:superba

Project description:Schima superba isolate:superba Genome sequencing and assembly

| PRJNA481145 | ENA

Schima superba

Project description:Schima superba overview

| PRJNA400102 | ENA

Schima superba

Project description:Schima superba Transcriptome or Gene expression

| PRJNA308885 | ENA

Schima wallichii

Project description:Schima wallichii Genome sequencing

| PRJNA435927 | ENA

Project description:Schima superba

| PRJNA674494 | ENA

Schima wallichii

Project description:Schima wallichii overview

| PRJNA436047 | ENA

Next Generation Sequencing Facilitates Quantitative Analysis of Transcriptomes in leaves of two subtropical trees grown under contrasting light

Project description:Purpose: The goal of this study is to evaluate transcriptional regulation of the accumulation of phenols and anthocyanins in young leaves of subtropical forest tree species by using NGS-derived RNA-seq. Methods: Leaf mRNA profiles of subtropical tree Schima superba and Cryptocarya concinna grown under contasting light were generated by deep sequencing, in triplicate, using Illumina. The sequence reads that passed quality filters were analyzed at the transcript isoform level with TopHat followed by Cufflinks. FPKM produced by RSEM are provided. Results: Assemblies of the sequence data yielded 61,618 and 64,413 unigenes for Schima superba and Cryptocarya concinna,respectively. Overall,75.14% and 66.46% of the unigenes were annotated in the protein database Nonredundant protein (Nr), Nonredundant nucleotide (Nt), Swiss-Prot、Kyoto Encyclopedia of Genes and Genomes (KEGG), Cluster of Orthologous Groups of proteins (COG) and Gene Ontology (GO) for S. superba and C concinna,respectively.A total of 3896, 3488 and 266 genes were differentially expressed in full light-exposed young leaf (FLY), low light-exposed young leaf (LYL) and low light-exposed mature leaf (LML) relative to low light-exposed mature leaf (FML) of S. superba, respectively, and 2097, 2047 and 211 genes were differentially expressed in the corresponding leaves of C. concinna. Conclusions: Our study represents the first detailed analysis of transcriptomes in young and mature leaves of dorminant trees from a subtropical forest in China, with biologic replicates, generated by RNA-seq technology. Photosynthesis-related genes and phenol pathways-related genes were extensively down- and up-regulated in young versus mature leaves of the two species.

2018-10-01 | GSE104004 | GEO

Complete chloroplast genome sequence of Schima superba (Teaceae)

Project description:Abstract Schima superba is the dominant species of subtropical evergreen broad-leaved forest which has the characteristics of ecological fire prevention function. In this study, we report the complete chloroplast genome sequence of S. superba. The cp genome was 157,205 bp in length with a GC content of 37.40%, including a large single-copy (LSC 87,161 bp), a small single-copy (SSC 18,092 bp), and a pair of inverted repeats (IR 25,976 bp). The genome encoded 133 functional genes, including 88 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The phylogenetic analysis showed that S. superba was closely related to Schima sinensis, Schima multibracteata, Schima crenata, and Schima remotisertata.

| S-EPMC8725924 | biostudies-literature

Schima mertensiana

Project description:Schima mertensiana Organism overview

| PRJNA67339 | ENA

Schima mertensiana

Project description:Schima mertensiana transcriptome project

| PRJDA67331 | ENA