Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Samsoniella hepiali strain:ascomycetes

ABSTRACT: Samsoniella hepiali strain:ascomycetes Transcriptome or Gene expression

PROVIDER: PRJNA765884 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR16067169_1.fastq.gz	Fastqsanger.gz
	SRR16067169_2.fastq.gz	Fastqsanger.gz
	SRR16067170_1.fastq.gz	Fastqsanger.gz
	SRR16067170_2.fastq.gz	Fastqsanger.gz
	SRR16067171_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Samsoniella hepiali

Project description:Samsoniella hepiali Transcriptome or Gene expression

| PRJNA203663 | ENA

Samsoniella hepiali

Project description:Paecilomyces hepiali overview

| PRJNA204957 | ENA

Samsoniella hepiali strain:FENG

Project description:Transcriptome of Paecilomyces hepiali

| PRJNA397526 | ENA

Samsoniella hepiali strain:FENG

Project description:Samsoniella hepiali strain:FENG Genome sequencing and assembly

| PRJNA301665 | ENA

Identification of Ascomycetes from Argentina

Project description:This is an study about first report of ascomycetes from Argentina

| PRJEB23263 | ENA

Heat resistant ascomycetes from semi-arid soils from Argentina

Project description:Heat resistant ascomycetes from semi-arid soils from Argentina

| PRJEB23768 | ENA

Comparative xylose metabolism among the ascomycetes C. albicans, S. stipitis and S. cerevisiae

Project description:The ascomycetes Saccharomyces cerevisiae, Candida albicans and Scheffersomyces stipitis metabolize the pentose sugar xylose very differently. S. cerevisiae fails to grow on xylose, while C. albicans can grow, and S. stipitis can both grow and ferment xylose to ethanol. However, all three species contain highly similar genes that encode xylose reductase and xylitol dehydrogenase required to convert xylose to xylulose, on which all three fungi grow. We have created C. albicans strains deleted for either or both the xylose reductase gene GRE3, and the xylitol dehydrogenase gene XYL2. As expected, all the mutant strains cannot grow on xylose, while the gre3 mutant can grow on xylitol. The gre3 and xyl2 mutants are complemented efficiently by the XYL1 and XYL2 from S. stipitis respectively. Intriguingly, the S. cerevisiae GRE3 and SOR1 genes can complement the gre3 and xyl2 mutants respectively, showing that S. cerevisiae contains the enzymatic capacity for converting xylose to xylulose. In addition, the gre3 xyl2 double mutant is effectively rescued by the xylose isomerase (XI) gene of either Piromyces or Orpinomyces, suggesting that the XI provides an alternative to the missing oxido-reductase functions in the mutant required for the xylose-xylulose conversion. Overall this work establishes that C. albicans strains engineered to lack essential steps for xylose metabolism provide a platform for the analysis of xylose metabolism enzymes from a variety of species, and confirms that S. cerevisiae has the genetic potential to convert xylose to xylulose, although non-engineered strains cannot proliferate on xylose as the sole carbon source.

2013-10-30 | GSE50476 | GEO

Transcriptome analysis of the ΔYGP1 strain compared to its parental strain

Project description:We sought to understand the change in the global gene expression profile of the ΔYGP1 strain in comparison with the BGL-6_Kl parental strain. The transcriptome analysis revealed the change in expression of genes involved in cell wall structure, biogenesis, and integrity that might contribute to the improvement of the BGL display efficiency phenotype.

2021-05-01 | GSE173680 | GEO

Induction of genes encoding lignocellulolytic enzymes in the basidiomycete Dichomitus squalens strain FBCC312

Project description:Expression of genes encoding plant biomass degrading enzymes in ascomycetes is controlled by transcriptional activators that respond to the presence of monomeric components of plant polymers. It can be expected that a similar system exists in basidiomycetes, but no homologs of the ascomycete regulators could be identified in basidiomycetes.

2018-04-05 | GSE98345 | GEO

comparative transcriptome analysis between original strain FS35 and FK520 high-yield strain OphaCfkbU

Project description:To solve the problem of low FK520 production by Streptomyces hygroscopicus var. ascomyceticus FS35, PHB synthesis gene phaC and PHB decomposition gene fkbU were co-overexpressed in parent strain FS35 to construct recombinant strain OphaCfkbU. Surprisingly, recombinant strain OphaCfkbU accumulated more biomass than parent strain FS35 in whole fermentation. Therefore, to explore the effect of co-overexpression on the strain growth, comparative transcriptome analysis were carried out between parent strain FS35 and recombinant strain OphaCfkbU. Transcriptome data showed that co-overexpression increased the utilization of sugar sources and stimulated the generation of coenzymes, ribosome, acyl carrier proteins and sulfate donors. This study revealed the internal mechanism of the effect of PHB on strain growth, proving a reference for the role of PHB in other microorganisms.

2021-03-23 | GSE143832 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data