Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Lung transcriptome sequencing of Tibetan sheep

PROVIDER: PRJNA778823 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR16878507_1.fastq.gz	Fastqsanger.gz
	SRR16878507_2.fastq.gz	Fastqsanger.gz
	SRR16878508_1.fastq.gz	Fastqsanger.gz
	SRR16878508_2.fastq.gz	Fastqsanger.gz
	SRR16878509_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Lung proteome sequencing of Tibetan sheep

Project description:To reveal the protein expression patterns in Tibetan sheep lungs at different altitudes, proteome sequencing was performed in this study.

2021-12-30 | PXD030661 |

Project description:Tibetan sheep gut samples sequencing

| PRJNA657975 | ENA

Project description:WGS of Tibetan sheep

| PRJNA797957 | ENA

iTRAQ-based Proteomics Reveals Candidate Proteins of Fat Deposition in Chinese Indigenous Sheep with Morphologically Different Tails

Project description:Chinese indigenous sheep can be classified into two types according to their tail morphology: fat-rumped and thin-tailed sheep, of which the typical breeds are Altay sheep and Tibetan sheep, respectively. To identify the differentially expressed proteins (DEPs) underlying the phenotypic differences between tail types, we used iTRAQ combined with multi-dimensional liquid chromatography tandem mass spectrometry (LC-MS/MS) technology to detect candidate proteins. We then subjected these to a database search, and identified the DEPs. Finally, bioinformatics technology was used to carry out GO functional and KEGG pathway analyses. A total of 3248 proteins were identified, of which 44 were up-regulated and 40 were down-regulated DEPs. Analyzing their GO function terms and KEGG pathways revealed that the functions of these DEPs are mainly binding, catalytic activity, structural molecule activity, molecular function regulator, and transporter activity. Among the genes encoding the DEPs, APOA2, GALK1, ADIPOQ, and NDUFS4 are associated with fat formation and metabolism.

2022-02-17 | PXD029488 | Pride

Tibetan sheep microbiome and metabolomics

Project description:Tibetan sheep microbiome and metabolomics

| PRJEB36249 | ENA

Gene Co-Expression Network Analysis Unraveling Transcriptional Regulation of High-altitude Adaptation of Tibetan Pigs

Project description:To elucidate further molecular mechanisms underlying the regulation of hypoxia-adaptive phenotypes in Tibetan pigs, we used transcriptome microarrays from lung tissues of Tibetan pigs and Duroc pigs both at high and low altitude analyzed differentially expressed genes (DEGs), biological pathway and constructed co-expression regulation network. A total of 3,068 DEGs were identified which involved metabolic process, cellular process, immune biological process and angiogenesis pathway. The regulatory (RIF) and phenotypic (PIF) impact factors analysis identified several known and potentially regulators of hypoxia adaption, including IKBKG, KLF6 and RBPJ (RIF1), SF3B1, EFEMP1, HOXB6 and ATF6 (RIF2).

2016-07-15 | GSE84409 | GEO

Proteome in Tibetan sheep testes

Project description:We obtained comprehensive protein profiles from testes of Tibetan sheep at three developmental stages (including pre-puberty, post-puberty and adulthood) using data-independent acquisition-based proteomic strategy to quantitatively identify the differentially abundant proteins (DAPs) associated with testicular development and function and to unravel the molecular basis of spermatogenesis in Tibetan sheep.

2022-04-08 | PXD033098 |

sheep gut metagenome breed:Tibetan sheep

Project description:sheep gut metagenome breed:Tibetan sheep Raw sequence reads

| PRJNA665604 | ENA

Ovis aries breed:tibetan sheep

Project description:Ovis aries breed:tibetan sheep Transcriptome or Gene expression

| PRJNA421633 | ENA

Project description:Sequencing of the HIF1a gene in Tibetan sheep

| PRJNA762600 | ENA