Metagenomic of Fungal Communities Inhabiting the soils from Nothofagus native forests of Southern Chile
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PROVIDER: PRJNA799353 | ENA |
REPOSITORIES: ENA
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Project description:Natural ecosystems provide services to agriculture such as pest control, soil nutrients, and key microbial components. These services and others in turn provide essential elements that fuel biomass productivity. Responsible agricultural management and conservation of natural habitats can enhance these ecosystem services. Vineyards are currently driving land-use changes in many Mediterranean ecosystems. These land-use changes could have important effects on the supporting ecosystems services related to the soil properties and the microbial communities associated with forests and vineyard soils. Here, we explore soil bacterial and fungal communities present in sclerophyllous forests and organic vineyards from three different wine growing areas in central Chile. We employed terminal restriction fragment length polymorphisms (T-RFLP) to describe the soil microbial communities inhabiting native forests and vineyards in central Chile. We found that the bacterial community changed between the sampled growing areas; however, the fungal community did not differ. At the local scale, our findings show that fungal communities differed between habitats because fungi species might be more sensitive to land-use change compared to bacterial species, as bacterial communities did not change between forests and vineyards. We discuss these findings based on the sensitivity of microbial communities to soil properties and land-use change. Finally, we focus our conclusions on the importance of naturally derived ecosystem services to vineyards.
| S-EPMC4588659 | biostudies-other
Project description:Tree species preferences of deadwood-inhabiting fungi in temperate forests
| PRJEB21052 | ENA
Project description:Individuals of Native American ancestry from Southern Chile genotyped with the Human Origins SNP Chip
| EGAD00010002499 | EGA
Project description:Nothofagus pumilio Transcriptome or Gene expression
| PRJNA414196 | ENA
Project description:Development of genomic resources for Nothofagus species using next-generation sequencing data
| PRJNA229815 | ENA
Project description:Bryophytes (liverworts, mosses and hornworts) are one of the most diverse plant groups worldwide but one of the least studied in temperate forests from an ecological perspective. In comparison to vascular plants, bryophytes have a broader distribution and a longer altitudinal gradient, and their influence on the landscape is poorly understood. The objective was to evaluate environmental drivers that can influence bryophyte cover, richness, diversity, and nestedness in different forest canopy compositions in two typical landscapes across the natural distribution of bryophytes in Tierra del Fuego (Argentina). Three natural Nothofagus forest types (pure deciduous, pure evergreen, and mixed deciduous-evergreen) in two landscapes (coasts < 100 m.a.s.l. and mountains > 400 m.a.s.l.) were selected (N = 60 plots). In each plot, we established one transect (10 m length) to measure bryophyte cover (point-intercept method). Data were evaluated using generalized linear mixed models and multivariate analyses. The studied environmental drivers were mainly explained by the microclimate, with higher effective annual precipitation and relative air humidity in the coastal forests and higher soil moisture in the mountain forests. Greater liverwort richness was found in evergreen forests at the mountain (9 species) than at the coastal, while mosses showed higher richness in mixed deciduous-evergreen forests at the coastal (11 species) than at the mountain. However, the expected richness according to the rarefaction/extrapolation curves suggested that it is possible to record additional species, except for liverworts in pure deciduous forests on the coasts. Similarities and differences among the studied forest types and among plots of the same forest type and landscape were detected. These differences in the studied indexes (similarity that varied between 0 and 1) ranged from 0.09-0.48 for liverworts and 0.05-0.65 for mosses. Moreover, these results indicated that pure evergreen and mixed deciduous-evergreen forests presented higher moss cover (10.7% and 10.0%, respectively), mainly in the mountains than on the coast. These outputs highlight the need to explore differences at greater altitudinal ranges to achieve sustainability objectives conservation planning for bryophytes in southernmost forests.
| S-EPMC7685467 | biostudies-literature
Project description:Nothofagus nervosa strain:Alpina Transcriptome or Gene expression
| PRJNA81795 | ENA
Project description:Background:The post-harvest recovery and sustained productivity of Nothofagus pumilio forests in Tierra del Fuego may be affected by the abundance and composition of ectomycorrhizal fungi (EMF). Timber harvesting alters EMF community structure in many managed forests, but the impacts of harvesting can vary with the management strategy. The implementation of variable retention (VR) management can maintain, increase, or decrease the diversity of many species, but the effects of VR on EMF in the forests of southern Patagonia have not been studied, nor has the role of EMF in the regeneration process of these forests. Methods:We evaluated the effects of VR management on the EMF community associated with N. pumilio seedlings. We quantified the abundance, composition, and diversity of EMF across aggregate (AR) and dispersed (DR) retention sites within VR managed areas, and compared them to primary forest (PF) unmanaged stands. EMF assemblage and taxonomic identities were determined by ITS-rDNA sequencing of individual root tips sampled from 280 seedlings across three landscape replicates. To better understand seedling performance, we tested the relationships between EMF colonization, EMF taxonomic composition, seedling biomass, and VR treatment. Results:The majority of EMF taxa were Basidiomycota belonging to the families Cortinariaceae (n = 29), Inocybaceae (n = 16), and Thelephoraceae (n = 8), which was in agreement with other studies of EMF diversity in Nothofagus forests. EMF richness and colonization was reduced in DR compared to AR and PF. Furthermore, EMF community composition was similar between AR and PF, but differed from the composition in DR. EMF community composition was correlated with seedling biomass and soil moisture. The presence of Peziza depressa was associated with higher seedling biomass and greater soil moisture, while Inocybe fibrillosibrunnea and Cortinarius amoenus were associated with reduced seedling biomass and lower soil moisture. Seedling biomass was more strongly related to retention type than EMF colonization, richness, or composition. Discussion:Our results demonstrate reduced EMF attributes and altered composition in VR treatments relative to PF stands, with stronger impacts in DR compared to AR. This suggests that VR has the potential to improve the conservation status of managed stands by supporting native EMF in AR. Our results also demonstrate the complex linkages between retention treatments, fungal community composition, and tree growth at individual and stand scales.
| S-EPMC6037133 | biostudies-literature
Project description:This SuperSeries is composed of the following subset Series: GSE38456: Characterizing gene regulatory networks in the brain of largemouth bass inhabiting rivers containing high levels of methyl-mercury (lab study) GSE38458: Characterizing gene regulatory networks in the brain of largemouth bass inhabiting rivers containing high levels of methyl-mercury (field study) Refer to individual Series
2012-08-31 | E-GEOD-38474 | biostudies-arrayexpress