Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

MicroRNA profiling data of fresh lung adenocarcinoma and adjacent normal tissues obtained from ten Korean patients using next-generation sequencing

ABSTRACT: MicroRNA profiling data of fresh lung adenocarcinoma and adjacent normal tissues obtained from ten Korean patients using next-generation sequencing

PROVIDER: PRJNA806640 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR18004531.fastq.gz	Fastqsanger.gz
	SRR18004532.fastq.gz	Fastqsanger.gz
	SRR18004533.fastq.gz	Fastqsanger.gz
	SRR18004534.fastq.gz	Fastqsanger.gz
	SRR18004535.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 20

Similar Datasets

MicroRNA profiling data of fresh lung adenocarcinoma and adjacent normal tissues obtained from ten Korean patients using next-generation sequencing

Project description:Differentially expressed miRNAs and potential miRNA biomarkers for lung adenocarcinoma tissues compared to adjacent normal tissues were identified using DESeq2 and Wx, respectively.

2022-02-16 | GSE196633 | GEO

A high dimensional deep sequencing study of non-small cell lung adenocarcinoma in never-smoker Korean females [Seq]

Project description:One of the most fertile applications of next generation sequencing will be in the field of cancer genomics. Here, we report a high-throughput multi-dimensional sequencing study of primary non-small cell lung adenocarcinoma tumors and adjacent normal tissues of 6 never-smoker Korean female patients. Our data encompass results from exome-seq, RNA-seq, small RNA-seq, and MeDIP-seq. We identified and validated novel genetic aberrations including 47 somatic mutations and 20 fusion transcripts. We also characterized gene expression profiles which we sought to integrate with genomic aberrations and epigenetic regulations into functional networks. Importantly, among others the gene network module governing G2/M cell check point emerged as the primary source of disturbance in these patients. In addition, our study strongly suggests that microRNAs make key regulatory inputs into this gene network module. Our study offers a paradigm for integrative genomics analysis and proposes potential target pathways for the control of non-small cell lung adenocarcinoma. Study of primary non-small cell lung adenocarcinoma tumors and normal tissues of 6 patients.

2013-05-10 | E-GEOD-37764 | biostudies-arrayexpress

A high dimensional deep sequencing study of non-small cell lung adenocarcinoma in never-smoker Korean females [aCGH]

2013-05-10 | E-GEOD-37759 | biostudies-arrayexpress

A high dimensional deep sequencing study of non-small cell lung adenocarcinoma in never-smoker Korean females [Seq]

2013-05-10 | GSE37764 | GEO

A high dimensional deep sequencing study of non-small cell lung adenocarcinoma in never-smoker Korean females [aCGH]

2013-05-10 | GSE37759 | GEO

Whole transcriptomic analysis of Korean osteoarthritis patients.

Project description:A database of genes showing differences in expression in synovium tissues and normal synovium tissues of Korean patients with advanced osteoarthritis was established.

2024-04-30 | GSE254682 | GEO

Human tumor-associated macrophages from lung adenocarcinoma vs. alveolar macrophages from adjacent non-tumor tissue

Project description:Human tumor-associated macrophages (TAMs) were isolated from lung adenocarcinoma tissues and compared with alveolar macrophages (AMs) obtained from adjacent non-tumor tissues. For details, see Hoppstädter et al., 2021 (doi:10.1016/j.ebiom.2021.103578).

2021-09-25 | GSE162669 | GEO

Transcriptome changes following castration of Korean cattle bulls in longissimus dorsi muscle

Project description:Transcripome of longissimus dorsi muscle was compared between Korean cattle bulls and steers by using a customized bovine Combimatrix microarray containing 10,199 genes. A customized bovine Combimatrix microarray containing 10,199 genes were constructed, and transcripome of longissimus dorsi muscle was compared between Korean cattle bulls (3 bulls) and steers (3 high-marbled and 3 low-marbled steers) by using the microarray hybridzation.

2013-06-30 | E-GEOD-35085 | biostudies-arrayexpress