Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Liver Transposase-Accessible Chromatin signal changes related to fat content in pigs

ABSTRACT: Liver Transposase-Accessible Chromatin signal changes related to fat content in pigs

PROVIDER: PRJNA821868 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR18560200_1.fastq.gz	Fastqsanger.gz
	SRR18560200_2.fastq.gz	Fastqsanger.gz
	SRR18560201_1.fastq.gz	Fastqsanger.gz
	SRR18560201_2.fastq.gz	Fastqsanger.gz
	SRR18560202_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 56

Similar Datasets

Liver Transposase-Accessible Chromatin signal changes related to fat content in pigs

Project description:The present work emplyed pigs as an animal model for recognition of molecular processes associated with fat deposition. The Transposase-Accessible Chromatin signal changes dependent on fat content were showed at the liver levels. In the experiment Złotnicka White pigs were used that were not under selection pressure, because they are included in to National Preservation Program.

2022-04-03 | GSE199870 | GEO

Liver Transposase-Accessible Chromatin signal changes related to fat content in pigs

Project description:Liver Transposase-Accessible Chromatin signal changes related to fat content in pigs

| PRJNA821868 | ENA

Assay for Transposase-Accessible Chromatin in E4BP4 overexpressed RAW264.7 cells

Project description:Assay for Transposase-Accessible Chromatin in E4BP4 overexpressed RAW264.7 cells

| PRJNA978597 | ENA

Liver and fat transcriptomic changes related to fat content in pigs

Project description:The present work emplyed pigs as an animal model for recognition of molecular processes associated with fat deposition. The transcriptomic changes dependent on fat content were showed at the fat and liver levels. In the experiment Złotnicka White pigs were used that were not under selection pressure, because they are included in to National Preservation Program.

2020-10-30 | GSE160436 | GEO

Assay for Transposase Accessible Chromatin (ATAC)-sequencing of the AML cell line U937

Project description:Assay for Transposase Accessible Chromatin (ATAC)-sequencing of the AML cell line U937

| PRJNA788787 | ENA

Transposase-accessible chromatin with high-throughput sequencing for purified neonatal aCMs and vCMs

Project description:Transposase-accessible chromatin with high-throughput sequencing for purified neonatal aCMs and vCMs

| PRJNA888106 | ENA

Assay for Transposase-Accessible Chromatin using sequencing of spleen memory CD4+ T cells

Project description:Assay for Transposase-Accessible Chromatin using sequencing of spleen memory CD4+ T cells

| PRJNA579595 | ENA

RNA sequencing data from pigs with high and low intramuscular fat content.

Project description:Intramuscular fat (IMF) content in pork is an important element of consumer preference, and is positively correlated with meat quality, including tenderness and juiciness. With advances in RNA sequencing technologies, transcriptome-related differences can be associated with specific traits in animals. The objective of this study was to investigate the differentially expressed genes (DEG) closely related with IMF content in porcine longissimus muscle using RNA sequencing. A total of 107 Berkshire pigs were used for IMF content measurements and significant difference between extremely high (H, n=3) and low (L, n=3) IMF content groups was found (P < 0.0001). From multi-dimensional scaling analyses, it was observed that the relationships between H and L groups were similar to each other. Here, we identified a total of 134 genes that were differentially expressed between the groups (FDR < 0.05, and FC ≥ 2). Functional analyses with DEGs revealed that the lipid metabolism (SCD and FASN) was one of the significant biological processes related with IMF content determination. In addition, we also found that DEGs related with muscle regeneration (MYOG and VEGFA) and extracellular matrix (COL1A1, COL1A2, COL5A1, COL14A1, and COL15A1) were changed between individuals with the extreme IMF contents, interestingly. These results will aid in understanding the regulation of IMF contents in pigs.

2017-06-15 | GSE86086 | GEO

Optimized protocol for assay for transposase-accessible chromatin by sequencing (ATAC-seq) from Drosophila melanogaster brain tissue

Project description:Transposase-accessible chromatin by sequencing (ATAC-seq) has emerged as an advantageous technique to assess chromatin accessibility owing to the robustness of "tagmentation" process and a relatively faster library preparation. A comprehensive ATAC-seq protocol from Drosophila brain tissue is currently unavailable. Here, we have provided a detailed protocol of ATAC-seq assay from Drosophila brain tissue. Starting from dissection and transposition to amplification of libraries has been elaborated. Furthermore, a robust ATAC-seq analysis pipeline has been presented. The protocol can be easily adapted for other soft tissues.

2023-10-24 | GSE246106 | GEO

Assay for transposase-accessible chromatin with sequencing (ATAC-seq) after various treatments in T47D cells

Project description:Assay for transposase-accessible chromatin with sequencing (ATAC-seq) after various treatments in T47D cells

| PRJNA1055469 | ENA