Project description:We present data of the grassland restoration experiment performed in the Bílé Karpaty Mts. (White Carpathians, Czech Republic) in dry species-rich meadows. First we harvested seed material in a preserved source meadow (donor site hereafter) by brush harvesting the vegetation once (B1 hereafter), brush harvesting three times during the season (B3 hereafter), and by cutting green hay (GH hereafter). Then we determined the species composition and seed quantity of the harvested material. Furthermore, we transferred the seeds to an experimental site on ex-arable land (receptor site hereafter), and monitored the development of the meadow communities in the following five years. Data are interpreted in: Á-J. Albert, O. Mudrák, I. Jongepierová, K. Fajmon, I. Frei, M. Ševčíková, J. Klimešová, J. Doležal, Grassland restoration on ex-arable land by transfer of brush-harvested propagules and green hay. Agriculture, Ecosystems & Environment 272 (2019), 74-82.
Project description:This experiment probed for the presence of known Arabidopsis and rice microRNAs in total RNA samples derived from species representative of the major groups of land plants: Eudicots (Arabidopsis thaliana, Nicotiana benthamiana), monocots (Oryza satica, Triticum aestivum), magnoliids (Liriodendron tulipifera), gymnosperms (Pinus resinosa), ferns (Ceratopteris thalictroides), lycopods (Selaginella uncinata), and mosses (Polytrichum juniperinum). In most cases two technical or biological replicates were performed.
Project description:A common-garden experiment was carried out to compare two genetically distinct strains of Atlantic salmon (Salmo salar) fed diets formulated with either high (CHO) or low (NoCHO) carbohydrate (starch). Twenty salmon from either a commercial farmed strain or a land-locked population were placed in two tanks (10 fish of each population in each tank) and fed either CHO or NoCHO feeds for 32 days. At the end of the experimental period fish were fasted for 8 h, euthanized and samples of blood and liver collected. Both diet and population had an effect on circulating glucose levels with land-locked salmon showing hypoglycaemia and dietary starch increasing this parameter. In contrast, land-locked salmon showed increased plasma triacylglycerol levels regardless of dietary treatment. This enhanced ability to metabolise dietary starch in land-locked compared to farmed salmon stock was also reflected at a molecular (gene) level as most of the metabolic pathways evaluated in the present study were mainly affected by the factor population rather than by diet. In particular, lower expression of genes for mitochondrial metabolism in land-locked salmon reflects drastic differences in energy metabolism between the populations. The liver transcriptome analysis highlighted some new gene candidates such as elovl6 to evaluate in future studies assessing the capacity of salmonids to cope with feeds containing higher levels of dietary starch.
Project description:Increasing utilization and human population density in the coastal zone is widely believed to place increasing stresses on the resident biota, but confirmation of this belief is somewhat lacking. While we have solid evidence that highly disturbed estuarine systems have dramatic changes in the resident biota (black and white if you will), we lack tools that distinguish the shades of grey. In part this lack of ability to distinguish shades of grey stems from the analytical tools that have been applied to studies of estuarine systems and perhaps more important is the insensitivity of the biological end points that we have used to assess these impacts. In this paper we will present data on the phenotypic adjustments as measured by transcriptomic signatures of a resilient organism (oysters) to land use practices in the surrounding watershed using advanced machine learning algorithms. We will demonstrate that such an approach can reveal subtle and meaningful shifts in oyster gene expression in response to land use. Further, the data shows that gill tissues are far more responsive and provide superior discrimination of land use classes than hepatopancreas and that transcript encoding proteins involved in energy productions, protein synthesis and basic metabolism are more robust indicators of land use than classic biomarkers such as metallothioneins, GST and cytochrome P450. Keywords: Comparative genomics, ecogenomics. Tissue differences, impacts of land use and contaminants on gene expression.
Project description:This study proposed a multi-criteria evaluation system for arable land resources by combining the soil integrated fertility index (IFI) with a soil cleanliness index (based on heavy metals and metalloid content). A total of 16 typical arable land units in Chongming District, China, were evaluated using the proposed evaluation system based on 104 collected soil samples in 16 towns. The comprehensive soil evaluation scores of arable lands in 16 towns were in the range of 90.7 to 99.2 with a mean of 96.2, indicating that the arable land in all 16 towns was at the level of excellent (??90.0). Lower cleanliness indices had a significant impact on the final evaluation score. In comparison with single-index evaluation systems (i.e., the IFI or soil cleanliness index), the proposed multi-criteria system better reflects the quality of the soil. In the practice of arable land requisition and subsidy policy, the proposed multi-criteria evaluation system not only encourages farmers to preserve arable lands during farming but also helps agricultural authorities make effective and reliable management decisions.