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ABSTRACT: Metagenomic analysis of the gut bacteria from the gut homogenate of white grub, Maladera insanabilis (Scarabaeidae: Coleoptera)

PROVIDER: PRJNA859284 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR20271046_1.fastq.gz	Fastqsanger.gz
	SRR20271046_2.fastq.gz	Fastqsanger.gz
	SRR20271047_1.fastq.gz	Fastqsanger.gz
	SRR20271047_2.fastq.gz	Fastqsanger.gz
	SRR20271048_1.fastq.gz	Fastqsanger.gz

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Project description:Metagenomic analysis of the gut bacteria from the gut homogenate of white grub, Maladera insanabilis (Scarabaeidae: Coleoptera)

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Development and validation of a microarray for the investigation of the CAZymes encoded by the human gut microbiome

Project description:Distal gut bacteria play a pivotal role in the digestion of dietary polysaccharides by producing a large number of carbohydrate-active enzymes (CAZymes) that the host otherwise does not produce. We report here the design of a high density custom microarray that we used to spot non-redundant DNA probes for more than 6,500 genes encoding glycoside hydrolases and lyases selected from 174 reference genomes from distal gut bacteria. The custom microarray was tested and validated by the hybridization of bacterial DNA extracted from the stool samples of lean, obese and anorexic individuals. Our results suggest that a microarray-based study can detect genes from low-abundance bacteria better than metagenomic-based studies. A striking example was the finding that a gene encoding a GH6-family cellulase was present in all subjects examined, whereas metagenomic studies have consistently failed to detect this gene in both human and animal gut microbiomes. In addition, an examination of eight stool samples allowed the identification of a corresponding CAZome core containing 46 families of glycoside hydrolases and polysaccharide lyases, which suggests the functional stability of the gut microbiota despite large taxonomical variations between individuals.

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Project description:<p>In this study, we investigated the role of the gut microbiota on the development of complications in kidney transplant recipients. We collected serial fecal specimens from 168 kidney transplant recipients within the first 3 months after transplantation. We performed 16S rRNA gene sequencing of the V4-V5 hypervariable region and examined whether the relative gut abundance of pathogenic bacteria was associated with future development of complications like bacteriuria and urinary tract infections. In a subset of samples, we performed metagenomic sequencing of stool and urine supernatant specimens to determine strain level analysis. </p>

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