Papio anubis
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ABSTRACT:
PROVIDER: PRJNA98791 | ENA |
REPOSITORIES: ENA
Similar Datasets
Project description:Docosahexaenoic acid (DHA, 22:6n-3) and arachidonic acid (ARA, 20:4n-6) are the major long chain polyunsaturated fatty acids (LCPUFA) of the central nervous system. We examined the alterations in transcriptional profiles in neonate baboon cerebral cortex brain tissue using high-density Affymetrix oligonucleotide arrays ("U133 plus 2.0"). Twelve neonates were divided into 3 groups: Control (C, no DHA-ARA); 1Ã LCPUFA (L, 0.33%DHA-0.67%ARA); 3Ã LCPUFA (L3, 1.00%DHA-0.67%ARA). Significance analysis (P < 0.05) of a total of >54,000 probe sets (ps) identified changes in expression levels of 1108 ps, representing 2.05% of the total ps on the oligoarray, with most ps showing <2-fold change. Comparing L and C, 534 ps were upregulated with supplementation, and 574 ps were downregulated. For the L3/C comparisons, 666 ps were upregulated and 442 ps were downregulated. Characterization of differentially regulated genes by gene ontology assign them to diverse biological functions, notably lipid metabolism, ion channel and transport, G-protein and signal transduction, development, visual perception, membrane function, apoptosis, cytoskeleton, peptidases, cell cycle, stress response, kinases and phosphatases, transcription regulation, receptors, and ubiquitin, with about 400 transcripts having no defined function. Of differentially expressed genes involved in lipid metabolism, PLA2G6, a phospholipase recently associated with infantile neuroaxonal dystrophy, was downregulated in both LCPUFA groups. ELOVL5, a PUFA elongase, was the only enzyme in the LCPUFA biosynthetic pathway that was differentially expressed. Mitochondrial fatty acid carrier, CPT2, was among several genes associated with mitochondrial fatty acid oxidation to be downregulated, while the mitochondrial proton carrier, UCP2, was upregulated. PUFA-regulated receptor, Retinoic acid receptor alpha (RARA) was repressed in both groups, while HNF4A, a PUFA regulated factor, was downregulated in L3/C. Genes involved in neural development, TIMM8A, NRG1, SEMA3D and NUMB, were upregulated while HES1 and SIM1 showed decreased expression. LUM, EML2, TIMP3 and TTC8 which have roles in visual perception were upregulated and TIA1, a silencer of COX2 gene translation is upregulated in L3/C. Ingenuity network analysis identified a top network associated with nervous system development and function with EGFR as the outstanding interaction partner. In this network EGFR interacts with genes involved in neural or visual perception, TIMP3, NRG1, ADAM17, EDG7 and FGF7. Quantitative real time-PCR analysis on selected genes confirmed the array results. The L and L3 groups have DHA and ARA content within the ranges observed in human and baboon breastmilk, and thus these data indicate that LCPUFA concentrations within the normal range of human breastmilk induce global changes in gene expression across numerous functions including transcripts involved in neural development, visual perception, etc. Experiment Overall Design: Twelve baboon neonates born spontaneously around 182 days gestation were randomized into 3 groups (n=4 per group). They were fed for 12 weeks on one of three formulas: C: Control (no DHA-ARA); L: 1Ã LCPUFA (0.33%DHA-0.67%ARA); L3: 3Ã LCPUFA (1.00%DHA-0.67%ARA).
2007-10-25 | E-GEOD-6519 | biostudies-arrayexpress
Project description:This data set consists of tissue-specific RNA-seq reads from 14 different tissues from a single female adult olive baboon (Papio anubis): bone marrow, brain cerebellum, brain frontal cortex, brain pituitary, brain temporal lobe, colon, heart, kidney, liver, lymph node, spleen, lung, skeletal muscle and thymus. The data set was generated by the non-human primate reference transcriptome resource (NHPRTR) project (http://nhprtr.org/), and was first made public on 14 Jan 2014.
2013-12-09 | E-MTAB-2848 | biostudies-arrayexpress
Project description:Baboon genome sequencing project and diversity panel
| PRJNA54005 | ENA
Project description:RNA-seq of adult baboon subventricular zone primary cells
| PRJNA252838 | ENA
Project description:olive baboon; a monkey native to sub-Saharan Africa
| PRJNA12965 | ENA
Project description:Changes in eutopic endometrial gene expression during the progression of experimental endometriosis in the baboon, Papio anubis
| PRJNA294015 | ENA
Project description:The objective was to determine changes in gene expression in baboon fetal livers at 90, 120, 140 and 165 days gestation (dG) due to reduction of feed consumed by dams. Control dams were fed ad libitum throughout the study, while 30% feed reduction (based on feed consumed by controls at the same gestation stage and adujsted for body weight) started at 30 dG for MNR dams. RNA-seq data was analyzed to identify differentially expressed genes and transcript variants across four time points.
2024-08-11 | GSE211085 | GEO
Project description:Papio anubis breed:Olive baboon Transcriptome or Gene expression
| PRJNA335365 | ENA
Project description:Papio anubis breed:Olive baboon Transcriptome or Gene expression
| PRJNA330162 | ENA