Proteomics

Dataset Information

0

Endogenous THBS1 is C-mannosylated by human induced pluripotent stem cells.


ABSTRACT: We used a human thrombospondin-1 (THBS1) fragment comprising thrombospondin type 1 repeats (TSRs) 1 to 3, which was recombinantly expressed in HEK 293T cells and digested with AspN to determine chromatographic retention times and to optimise MS parameters. We detected two peptides from TSR2 and TSR3 containing the consensus site for C-mannosylation in their non-, mono- and di-C-mannosylated state. These peptides – irrespective of C-mannosylation - were detected at less than 3 % of the intensity of two other THBS-derived peptides which do not contain a WxxW motif (Figure 3A). With the knowledge of the specific chromatographic retention times and the intensity patterns of fragment ions for the two peptides containing the WxxW sites for C-mannosylation from the recombinant THBS1, we now analysed a native sample of hiPSC-derived proteins from cell culture supernatants by MRM. Indeed we detected the most intense fragment ions for the peptide DACPINGGWGPWSPW with one or two C-mannoses at the expected elution times and with the expected intensity profiles (Figure 3B).

ORGANISM(S): Homo Sapiens

SUBMITTER: Roman Sakson  

PROVIDER: PXD024117 | panorama | Wed May 12 00:00:00 BST 2021

REPOSITORIES: PanoramaPublic

altmetric image

Publications

The C-Mannosylome of Human Induced Pluripotent Stem Cells Implies a Role for ADAMTS16 C-Mannosylation in Eye Development.

Cirksena Karsten K   Hütte Hermann J HJ   Shcherbakova Aleksandra A   Thumberger Thomas T   Sakson Roman R   Weiss Stefan S   Jensen Lars Riff LR   Friedrich Alina A   Todt Daniel D   Kuss Andreas W AW   Ruppert Thomas T   Wittbrodt Joachim J   Bakker Hans H   Buettner Falk F R FFR  

Molecular & cellular proteomics : MCP 20210508


C-mannosylation is a modification of tryptophan residues with a single mannose and can affect protein folding, secretion, and/or function. To date, only a few proteins have been demonstrated to be C-mannosylated, and studies that globally assess protein C-mannosylation are scarce. To interrogate the C-mannosylome of human induced pluripotent stem cells, we compared the secretomes of CRISPR-Cas9 mutants lacking either the C-mannosyltransferase DPY19L1 or DPY19L3 to WT human induced pluripotent st  ...[more]

Similar Datasets

2022-02-15 | PXD000334 | Pride
2016-12-02 | PXD004447 | Pride
2019-05-30 | PXD010871 | Pride
2013-02-18 | PXD000150 | Pride
2014-08-04 | PXD000154 | Pride
2022-08-01 | PXD030431 | panorama
2021-03-12 | MSV000087047 | MassIVE
2018-10-18 | PXD002966 | Pride
2020-05-07 | PXD018176 | Pride
2019-06-03 | PXD013823 | Pride