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Zebrafish_Liver

ABSTRACT: Liver, Agilent Q-TOF

REANALYSIS of: PXD000479

INSTRUMENT(S): Agilent Q-ToF

ORGANISM(S): Danio Rerio (zebrafish)

SUBMITTER: Kelkar DS, et al.

PROVIDER: PAe004704 | PeptideAtlas | 2014-12-31

REPOSITORIES: PeptideAtlas

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Publications

Annotation of the zebrafish genome through an integrated transcriptomic and proteomic analysis.

Kelkar Dhanashree S DS Provost Elayne E Chaerkady Raghothama R Muthusamy Babylakshmi B Manda Srikanth S SS Subbannayya Tejaswini T Selvan Lakshmi Dhevi N LD Wang Chieh-Huei CH Datta Keshava K KK Woo Sunghee S Dwivedi Sutopa B SB Renuse Santosh S Getnet Derese D Huang Tai-Chung TC Kim Min-Sik MS Pinto Sneha M SM Mitchell Christopher J CJ Madugundu Anil K AK Kumar Praveen P Sharma Jyoti J Advani Jayshree J Dey Gourav G Balakrishnan Lavanya L Syed Nazia N Nanjappa Vishalakshi V Subbannayya Yashwanth Y Goel Renu R Prasad T S Keshava TS Bafna Vineet V Sirdeshmukh Ravi R Gowda Harsha H Wang Charles C Leach Steven D SD Pandey Akhilesh A

Molecular & cellular proteomics : MCP 20140724 11

Accurate annotation of protein-coding genes is one of the primary tasks upon the completion of whole genome sequencing of any organism. In this study, we used an integrated transcriptomic and proteomic strategy to validate and improve the existing zebrafish genome annotation. We undertook high-resolution mass-spectrometry-based proteomic profiling of 10 adult organs, whole adult fish body, and two developmental stages of zebrafish (SAT line), in addition to transcriptomic profiling of six organs ...[more]

PMID: 25060758

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Transcriptome analysis defines ToF and ASD myocardial gene signatures and reveals disease-specific gene reprogramming upon surgery with cardiopulmonary bypass

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