Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Respiratory System

ABSTRACT: A mathematical model of respiratory system.

SUBMITTER: David Nickerson

PROVIDER: 3a4 | Physiome Model Repository |

REPOSITORIES: PMR

ACCESS DATA

Json Xml

Similar Datasets

Homo sapiens

Project description:A Mathematical Model for Affymetrix GeneChip Probe Level Data

| PRJNA101369 | ENA

Combining mathematical and statistical modeling to simulate time course bulk and single cell gene expression data in cancer with CancerInSilico

Project description:We develop an R/Bioconductor package CancerInSilico to simulate bulk and single cell transcriptional data from a known ground truth obtained from mathematical models of cellular systems. This package contains a general R infrastructure for cell-based mathematical model, implemented for an off-lattice, cell-center Monte Carlo mathematical model. We also adapt this model to simulate the impact of growth suppression by targeted therapeutics in cancer and benchmark simulations against bulk in vitro experimental data. Sensitivity to parameters is evaluated and used to predict the relative impact of variation in cellular growth parameters and cell types on tumor heterogeneity in therapeutic response.

2020-07-09 | GSE114375 | GEO

Homo sapiens

Project description:Spheroid model system

| PRJNA153675 | ENA

Homo sapiens

Project description:Spheroid model system (II)

| PRJNA232517 | ENA

Trypanosoma brucei strain:Lister 427

Project description:Mathematical modeling of Trypanosoma brucei transcription

| PRJNA315042 | ENA

Lineage tracing of patient-derived U3065MG glioblastoma cells to reconstruct plasticity

Project description:The aim of the experiment was to obtain a time series data set of barcoded glioblastoma cells to use as input for a mathematical model of glioblastoma state transition and growth, to reconstruct the structure of the transition network, the transition rates, and individual growth rates of each state.

2021-07-07 | E-MTAB-10615 | biostudies-arrayexpress

Lineage tracing of patient-derived glioblastoma cells to reconstruct plasticity

2021-07-07 | E-MTAB-9296 | biostudies-arrayexpress

Quantifying post-transcriptional regulation in the development of Drosophila melanogaster [s2r]

Project description:Proteome and transcriptome often show poor correlation, hindering the system-wide analysis of post-transcriptional regulation. Here, the authors study proteome and transcriptome dynamics during Drosophila embryogenesis and present basic mathematical models describing the temporal regulation of most protein-RNA pairs.

2018-10-13 | GSE121161 | GEO

Quantifying post-transcriptional regulation in the development of Drosophila melanogaster [devel]

2018-10-13 | GSE121160 | GEO

Modeling protein destiny in developing tomato fruit

Project description:Proteomics and transcriptomics data of tomato fruits at 9 developmental stages were used to calculate with a mathematical model the rate constants of synthesis and degradation for over 1,000 proteins.

2019-05-06 | PXD012877 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data