Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

SuMu homologs - Mass spectrometry of 21 homologs of SuMu

ABSTRACT: Mass spectrometry of 21 homologs of SuMu

INSTRUMENT(S): QSTAR XL, instrument model

ORGANISM(S): Siphoviridae (phages With Long Non-contractile Tails) Enterobacteria Phage Mu (bacteriophage Mu) Clostridium Botulinum C Phage (clostridium Botulinum C Bacteriophage) Synechococcus Phage S-ssm7 Synechococcus Phage Syn9 Listeria Phage A118 (bacteriophage A118)

SUBMITTER: Emilie Zehr

PROVIDER: PRD000685 | Pride | 2012-07-04

REPOSITORIES: pride

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	PRIDE_Exp_Complete_Ac_22501.pride.mgf.gz	Mgf
	PRIDE_Exp_Complete_Ac_22501.xml.gz	Xml
	PRIDE_Exp_Complete_Ac_22502.pride.mgf.gz	Mgf
	PRIDE_Exp_Complete_Ac_22502.xml.gz	Xml
	PRIDE_Exp_Complete_Ac_22503.pride.mgf.gz	Mgf

Items per page:

1 - 5 of 12

Similar Datasets

SuMu homologs - Mass spectrometry of 21 homologs of SuMu

Project description:Mass spectrometry of 21 homologs of SuMu

2012-07-04 | PRD000679 | Pride

Cyanobacterial identification by native mass spectrometry

Project description:Cyanobacterial identification by native mass spectrometry

| PRJEB45336 | ENA

MMP qualitative and quantitative mass spectrometry

Project description:Methanococcus maripaludis is a methanogenic archaeon. Within its genome, there are two operons for membrane associated hydrogenases, eha and ehb. To investigate the regulation of ehb on the cell, an S40 mutant was constructed in such a way that a portion of the ehb operon was replaced by pac cassette in the wild type parental strain S2 (done by Whitman's group at the University of Georgia). The S40 and S2 strains were grown in 14N and 15N media with acetate separately. A biological replicate was made by switching the media. Mass spectrometry based quantitative proteomics were done on the mixtures to investigate the differences in expression patterns between S40 and S2. Keywords: isotope labeling mass spectrometry, quantitative proteomics

2005-09-20 | GSE2744 | GEO

Chromatin proteins linked to dosage compensation in Drosophila captured by ChIP-mass spectrometry

Project description:We report the usage of ChIP-mass spectrometry in identifying proteins and histone modifications involved in Drosophila dosage compensation. We identified a chromatin targeting factor, CG4747, that is involved in recognition of H3K36me3 and robust recruitment of the Drosophila MSL complex to its correct targets on the male X chromosome. ChIP-seq with PAP antibody of Drosophila larvae expressing C-terminally TAP-tagged CG4747.

2012-11-06 | E-GEOD-42025 | biostudies-arrayexpress

Optimal settings of mass spectrometry open search strategy for higher confidence

Project description:Optimal settings of mass spectrometry open search strategy for higher confidence

| PRJNA448556 | ENA

Differential Peptide Subtraction (DPS): mass spectrometry for human cancer virus discovery

Project description:Differential Peptide Subtraction (DPS): mass spectrometry for human cancer virus discovery

| PRJNA662225 | ENA

Chromatin proteins linked to dosage compensation in Drosophila captured by ChIP-mass spectrometry

2012-11-06 | GSE42025 | GEO

Revealing the small proteome of Haloferax volcanii by ribosome profiling and small-protein optimised mass spectrometry

Project description:We present a combinatorial approach, integrating experimental data from small protein-optimized mass spectrometry (MS) and ribosome profiling (Ribo-seq), to generate a high confidence inventory of small proteins in the model archaeon Haloferax volcanii.

2023-01-18 | GSE208086 | GEO

pSILAC mass spectrometry reveals ZFP91 as novel IMiD dependent substrate of the CRL4CRBN ligase

Project description:Thalidomide and its derivatives lenalidomide and pomalidomide (IMiDs) are effective treatments of hematologic malignancies. It was shown that IMiDs impart gain of function properties to the CUL4-RBX1-DDB1-CRBN (CRL4CRBN) ubiquitin ligase that enable binding, ubiquitination and degradation of key therapeutic targets such as IKFZ1, IKZF3 and CSNK1A1. While these substrates have been implicated as efficacy targets in multiple myeloma (MM) and 5q deletion associated myelodysplastic syndrome (del(5q)-MDS), other targets likely exist. Using a pulse-chase SILAC mass spectrometry-based proteomics approach, we demonstrate that lenalidomide induces the ubiquitination and degradation of ZFP91. We establish that ZFP91 is a bona fide IMiD dependent CRL4CRBN substrate and further show that ZFP91 harbors a zinc finger (ZnF) motif, related to the IKZF1/3 ZnF, critical for IMiD dependent CRBN binding. These findings demonstrate that single time point pulse-chase SILAC mass spectrometry-based proteomics (pSILAC-MS) is a sensitive approach for target identification of small molecules inducing selective protein degradation.

2017-03-01 | GSE94728 | GEO

RNA-seq and Mass spectrometry analysis reveals the roles of YTHDF1 in aging

Project description:RNA-seq and Mass spectrometry analysis reveals the roles of YTHDF1 in aging

| PRJNA630431 | ENA