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PIA - iPRG2008 Benchmark Dataset

ABSTRACT: This dataset is no actual new study but the iPRG2008 benchmark dataset used in the PIA manuscript.

INSTRUMENT(S): Q TRAP

ORGANISM(S): Mus Musculus (mouse)

SUBMITTER: Julian Uszkoreit

LAB HEAD: Katrin Marcus

PROVIDER: PXD000793 | Pride | 2015-05-08

REPOSITORIES: Pride

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Dataset's files

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			Action	DRS
	01CEX13uLDBSEMC.wiff	Wiff
	01CEX13uLDBSEMC.wiff.scan	Wiff
	02CEX13uLDBSEMC1ex.wiff	Wiff
	02CEX13uLDBSEMC1ex.wiff.scan	Wiff
	03CEX15uLDBSEMC2ex.wiff	Wiff

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Publications

PIA: An Intuitive Protein Inference Engine with a Web-Based User Interface.

Uszkoreit Julian J Maerkens Alexandra A Perez-Riverol Yasset Y Meyer Helmut E HE Marcus Katrin K Stephan Christian C Kohlbacher Oliver O Eisenacher Martin M

Journal of proteome research 20150610 7

Protein inference connects the peptide spectrum matches (PSMs) obtained from database search engines back to proteins, which are typically at the heart of most proteomics studies. Different search engines yield different PSMs and thus different protein lists. Analysis of results from one or multiple search engines is often hampered by different data exchange formats and lack of convenient and intuitive user interfaces. We present PIA, a flexible software suite for combining PSMs from different s ...[more]

PMID: 25938255

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