Proteomics

Dataset Information

0

Proteogenomics of Gammarus roeseli ovaries


ABSTRACT: Proteogenomics of Gammarus roeseli ovaries to define the core-proteome of female reproductive tissues from crustacean amphipods

INSTRUMENT(S): LTQ Orbitrap

ORGANISM(S): Gammarus Roeselii

TISSUE(S): Ovary

SUBMITTER: Jean ARMENGAUD  

LAB HEAD: Jean Armengaud

PROVIDER: PXD002311 | Pride | 2015-09-21

REPOSITORIES: pride

Dataset's files

Source:
Action DRS
F102290.mzid.gz Mzid
F102290.pride.mztab.gz Mztab
GAMMARUS_contigs.prot_20120709.fasta Fasta
Ro-D1_d15-1.RAW Raw
Ro-D1_d15-2.RAW Raw
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Publications

Data for comparative proteomics of ovaries from five non-model, crustacean amphipods.

Trapp Judith J   Almunia Christine C   Gaillard Jean-Charles JC   Pible Olivier O   Chaumot Arnaud A   Geffard Olivier O   Armengaud Jean J  

Data in brief 20150812


Ovaries were taken from five sexually mature amphipods: Gammarus fossarum, Gammarus pulex, Gammarus roeseli, Hyallela azteca and Parhyale hawaiensis. The soluble proteome extracted from individual pair of ovaries from five biological replicates was trypsin digested and the resulting peptides were analyzed by high resolution tandem mass spectrometry. The spectra were assigned with four protein sequence databases with different specificities: a RNAseq-derived G. fossarum database; a RNAseq-derived  ...[more]

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