Dataset Information

Target identification for 11q13 amplicon

ABSTRACT: Proteomic strategy to define therapeutically relevant targets in cell lines that contain the 11q13 amplicon compared to those that do not and to ascertain which genes are amplified at the protein level and, concomitantly, are key drivers for tumor growth and/or maintenance. Furthermore, so called passenger genes that are amplified with driver genes and a manifest on the cell surface can be attractive targets for an antibody – drug conjugate approach (ADC).

INSTRUMENT(S): LTQ Orbitrap Velos

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Permanent Cell Line Cell, Cell Culture

DISEASE(S): Neck Carcinoma

SUBMITTER: Heather Hoover

LAB HEAD: Nancy Finkel

PROVIDER: PXD002486 | Pride | 2015-08-04

REPOSITORIES: Pride

ACCESS DATA

Dataset's files

Source:

			Action	DRS
	11q13_group1_JMn2_f1.RAW	Raw
	11q13_group1_JMn2_f1.mgf	Mgf
	11q13_group1_JMn2_f1.mzid.gz	Mzid
	11q13_group1_JMn2_f1.pride.mgf.gz	Mgf
	11q13_group1_JMn2_f10.RAW	Raw

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Publications

Quantitative Proteomic Verification of Membrane Proteins as Potential Therapeutic Targets Located in the 11q13 Amplicon in Cancers.

Hoover Heather H Li Jun J Marchese Jason J Rothwell Christopher C Borawoski Jason J Jeffery Douglas A DA Gaither L Alex LA Finkel Nancy N

Journal of proteome research 20150729 9

Tumor types can be defined cytologically by their regions of chromosomal amplification, which often results in the high expression of both mRNA and proteins of certain genes contained within the amplicon. An important strategy for defining therapeutically relevant targets in these situations is to ascertain which genes are amplified at the protein level and, concomitantly, are key drivers for tumor growth or maintenance. Furthermore, so-called passenger genes that are amplified with driver genes ...[more]

PMID: 26151158

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