Proteomics

Dataset Information

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Proteome validation for novel full-length genes in the giant panda


ABSTRACT: we applied RNA-seq to detect novel expressed transcripts in 12 tissues of giant pandas, using a transcriptome reconstruction strategy combining reference-based and de novo methods. Then we used mass spectrometry method to identify proteomes of five selected tissues, aiming at validating these novel full-length genes we identified.

INSTRUMENT(S): LTQ

ORGANISM(S): Ailuropoda Melanoleuca (giant Panda)

TISSUE(S): Testis, Ovary, Brain, Tongue, Hypophysis, Diploid Cell

SUBMITTER: Yibo Hu  

LAB HEAD: Fuwen Wei

PROVIDER: PXD002917 | Pride | 2015-12-23

REPOSITORIES: Pride

Dataset's files

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Publications

Improvement of genome assembly completeness and identification of novel full-length protein-coding genes by RNA-seq in the giant panda genome.

Chen Meili M   Hu Yibo Y   Liu Jingxing J   Wu Qi Q   Zhang Chenglin C   Yu Jun J   Xiao Jingfa J   Wei Fuwen F   Wu Jiayan J  

Scientific reports 20151211


High-quality and complete gene models are the basis of whole genome analyses. The giant panda (Ailuropoda melanoleuca) genome was the first genome sequenced on the basis of solely short reads, but the genome annotation had lacked the support of transcriptomic evidence. In this study, we applied RNA-seq to globally improve the genome assembly completeness and to detect novel expressed transcripts in 12 tissues from giant pandas, by using a transcriptome reconstruction strategy that combined refer  ...[more]

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