Proteomics

Dataset Information

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Human_Testis_QE-HF - Deep Coverage Proteomics Identifies More Low-Abundance Missing Proteins in Human Testis Tissue with Q-Exactive HF Mass Spectrometer

ABSTRACT: The Chromosome-Centric Human Proteome Project (C-HPP) aims at finding existence evidence of missing proteins (MPs) at the early stage. Based on previous research, it has been proved that human testis tissue is suitable for further research of MPs because of its high gene expression level and high transcriptome complexity. However, the limits of dynamic range in mass spectrometric analysis and the deficiency in sensitivity and resolution will seriously affect the detection efficiency. In this study, we used Q-Exactive HF to detect three individual testis tissues dealted with two separation methods (tricine-SDS-PAGE and SDS-PAGE).

INSTRUMENT(S): Q Exactive HF

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Testis

SUBMITTER: Wei Wei  

LAB HEAD: Ping Xu

PROVIDER: PXD004092 | Pride | 2016-09-30

REPOSITORIES: Pride

Json Xml

Dataset's files

Source:
Action DRS
CHPP2016.fasta Fasta
CHPP_Testis_HF.pep.xml Pepxml
CHPP_Testis_HF.prot.xml Xml
CHPP_Testis_Velos.pep.xml Pepxml
CHPP_Testis_Velos.prot.xml Xml
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Publications

Deep Coverage Proteomics Identifies More Low-Abundance Missing Proteins in Human Testis Tissue with Q-Exactive HF Mass Spectrometer.

Wei Wei W   Luo Weijia W   Wu Feilin F   Peng Xuehui X   Zhang Yao Y   Zhang Manli M   Zhao Yan Y   Su Na N   Qi YingZi Y   Chen Lingsheng L   Zhang Yangjun Y   Wen Bo B   He Fuchu F   Xu Ping P  

Journal of proteome research 20160829 11

Since 2012, missing proteins (MPs) investigation has been one of the critical missions of Chromosome-Centric Human Proteome Project (C-HPP) through various biochemical strategies. On the basis of our previous testis MPs study, faster scanning and higher resolution mass-spectrometry-based proteomics might be conducive to MPs exploration, especially for low-abundance proteins. In this study, Q-Exactive HF (HF) was used to survey proteins from the same testis tissues separated by two separating met  ...[more]