Proteomics

Dataset Information

0

Dynamics of the interaction between cotton bollworm Helicoverpa armigera and nucleopolyhedrovirus as revealed by integrated transcriptomic and proteomic analyses


ABSTRACT: Over the past decades, Helicoverpa armigera nucleopolyhedrovirus (HearNPV) has been widely used for biocontrol of cotton bollworm, which is one of the most destructive pest insects in agriculture worldwide. However, the molecular mechanism underlying the interaction between HearNPV and host insects remains poorly understood. In this study, high throughput RNA-sequencing was integrated with label-free quantitative proteomics analysis to examine the dynamics of gene expression in the fat body of H. armigera larvae in response to challenge with HearNPV. RNA-sequencing-based transcriptomic analysis indicated that host gene expression was substantially altered, yielding 3,850 differentially expressed genes (DEGs), while no global transcriptional shut-off effects were observed in the fat body. Among the DEGs, 60 immunity-related genes were down-regulated after baculovirus infection, a finding that was consistent with the results of quantitative real-time RT-PCR (qRT-PCR). Gene ontology and functional classification demonstrated that the majority of down-regulated genes were enriched in gene cohorts involved in energy, carbohydrate, and amino acid metabolic pathways. Proteomics analysis identified differentially expressed proteins in the fat body, among which 76 were up-regulated, whereas 373 were significantly down-regulated upon infection. The down-regulated proteins are involved in metabolic pathways such as energy metabolism, carbohydrate metabolism (CM), and amino acid metabolism, in agreement with the RNA-seq data. Furthermore, correlation analysis suggested a strong association between the mRNA level and protein abundance in the H. armigera fat body. More importantly, the predicted gene interaction network indicated that a large subset of metabolic networks was significantly negatively regulated by viral infection, including CM-related enzymes such as aldolase, enolase, malate dehydrogenase and triose-phosphate isomerase. Taken together, transcriptomic combined with proteomic data elucidated that baculovirus established systemic infection of host larvae, and manipulated the host mainly by suppressing the host immune response and down-regulating metabolism to allow viral self-replication and proliferation. Therefore, this study provided important insights into the mechanism of host-baculovirus interaction.

INSTRUMENT(S): Q Exactive

ORGANISM(S): Helicoverpa Armigera (cotton Bollworm)

TISSUE(S): Fat Body

SUBMITTER: Zhen Zou  

LAB HEAD: Zhen Zou

PROVIDER: PXD004748 | Pride | 2017-04-19

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
Infected1_R1.msf Msf
Infected1_R1.mzid Mzid
Infected1_R1_1.mgf Mgf
Infected1_R1_1.raw Raw
Infected1_R1_2.mgf Mgf
Items per page:
1 - 5 of 252
altmetric image

Publications

Dynamics of the Interaction between Cotton Bollworm <i>Helicoverpa armigera</i> and Nucleopolyhedrovirus as Revealed by Integrated Transcriptomic and Proteomic Analyses.

Xing Longsheng L   Yuan Chuanfei C   Wang Manli M   Lin Zhe Z   Shen Benchang B   Hu Zhihong Z   Zou Zhen Z  

Molecular & cellular proteomics : MCP 20170412 6


Over the past decades, <i>Helicoverpa armigera</i> nucleopolyhedrovirus (HearNPV) has been widely used for biocontrol of cotton bollworm, which is one of the most destructive pest insects in agriculture worldwide. However, the molecular mechanism underlying the interaction between HearNPV and host insects remains poorly understood. In this study, high-throughput RNA-sequencing was integrated with label-free quantitative proteomics analysis to examine the dynamics of gene expression in the fat bo  ...[more]

Similar Datasets

2014-08-26 | GSE60739 | GEO
2019-01-07 | PXD006677 | Pride
2016-02-06 | E-GEOD-77619 | biostudies-arrayexpress
2014-08-26 | E-GEOD-60739 | biostudies-arrayexpress
2018-02-23 | GSE99228 | GEO
2022-03-22 | GSE198690 | GEO
2015-09-17 | E-GEOD-73085 | biostudies-arrayexpress
2015-06-11 | E-GEOD-60064 | biostudies-arrayexpress
2017-09-19 | PXD006126 | Pride
2021-11-22 | GSE142841 | GEO