Browse
Submit Data
Databases
API
Help

Dataset Information

329 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Organ Specific Proteomics of Soybean under Flooding and Drought Stresses

ABSTRACT: Flooding and drought are adverse factors for soybean growth. To obtain better insight into the response mechanism of soybean under flooding and drought stresses, organ specificanalysis was performed using gel-free proteomic technique.

INSTRUMENT(S): LTQ Orbitrap

ORGANISM(S): Glycine Max

TISSUE(S): Plant Cell, Root, Leaf, Shoot

DISEASE(S): Wounds And Injuries

SUBMITTER: Wang Xin

LAB HEAD: Setsuko Komatsu

PROVIDER: PXD005342 | Pride | 2017-04-26

REPOSITORIES: Pride

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	R1120H.mgf	Mgf
	R1120H.msf	Msf
	R1120H.pep.xml	Pepxml
	R1120H.raw	Raw
	R1120R.mgf	Mgf

Items per page:

1 - 5 of 144

Publications

Organ-specific proteomics of soybean seedlings under flooding and drought stresses.

Wang Xin X Khodadadi Ehsaneh E Fakheri Baratali B Komatsu Setsuko S

Journal of proteomics 20170418

Organ-specific analyses enrich the understanding of plant growth and development under abiotic stresses. To elucidate the cellular responses in soybean seedlings exposed to flooding and drought stresses, organ-specific analysis was performed using a gel-free/label-free proteomic technique. Physiological analysis indicated that enzyme activities of alcohol dehydrogenase and delta-1-pyrroline-5-carboxylate synthase were markedly increased in leaf and root of plants treated with 6days of flooding a ...[more]

PMID: 28435105

Similar Datasets

Application of Simulation Model to Uncover the Mechanisms of Flooding Tolerance and Difference between Flooding and Drought in Soybean

Project description:To decipher stress responses under flooding and drought as well as flooding-tolerant mechanisms in soybean, the mathematic biological approach of simulation model was applied. Furthermore, wild-type soybean with ABA treatment and flooding-tolerant mutant line, which displayed flooding tolerance, were used as the flooding-tolerant materials. Proteins acquired by gel-free/label-free proteomic technique were used for simulation model of responses under different stresses and flooding tolerant.

2018-10-26 | PXD005680 | Pride

Proteomic analysis of soybean root including hypocotyl during recovery after drought stress

Project description:Soybean is a nutritionally important crop that exhibits reductions in growth and yields under drought stress. To investigate soybean responses during post-drought recovery, a gel-free proteomic technique was used to examine the protein profile. Two-day-old soybeans were stressed with drought for 4 days, recovered for 4 days, and root including hypocotyl was collected under drought and during the recovery stage. Morphological analysis revealed that growth was suppressed under drought stress that recovered following stress removal. Malondialdehyde content was increased under drought stress but returned to normal during the recovery stage. A total of 792 and 888 proteins were identified in control and drought-stressed root including hypocotyl during recovery stage, respectively. Based on the proteomic and cluster analyses, peroxidase and aldehyde dehydrogenase were significantly changed at analyzed time points under drought stress and during recovery. The activity of peroxidase was decreased under drought stress but increased during recovery. The activity of aldehyde dehydrogenase was increased under drought stress but returned to normal during the recovery stage. These results suggest that peroxidase and aldehyde dehydrogenase play key role in post-drought recovery in soybean by scavenging toxic reactive oxygen species and reducing harmful aldehydes load.

2016-06-16 | PXD003650 | Pride

Quantitative proteomics reveals the flooding tolerant mechanism in soybean mutant and ABA treated soybean

Project description:Soybean, which provides abundant proteins and edible oil, is an important crop; however, it is very sensitive to flooding stress. The growth and grain yields of soybean are seriously reduced by flooding stress. To explore the initial flooding-tolerant mechanism of soybean, flooding-tolerant mutant line and ABA treated soybean were used. Because both material and treatment showed the flooding tolerance, the commonly changed proteins in plants under initial flooding stress were identified. To identify the common proteins, gel free/label free proteomic technique was used.

2019-01-09 | PXD003329 | Pride

Quantitative Proteomics Reveals the Role of Protein Phosphorylation in Initial Changes of Soybean Root Tip under Flooding Stress

Project description:Flooding has a severe negative effect on cultivation in the early stage of soybean growth. To understand the role of protein phosphorylation in early-stage soybean responding to flooding stress, quantitative phosphoproteomic technique was used.

2014-11-13 | PXD000898 | Pride

Proteomic and morphological effect of nanosilver on soybean under flooding stress

Project description:Flooding stress has a negative impact on the soybean cultivation in early growth stages. In order to understand the effect of nanosilver on the soybean growth under flooding stress, quantitative proteomics technique was used.

2016-12-14 | PXD001579 | Pride

Proteomic analysis of the effect of aluminum oxide nanoparticles on soybean root under flooding stress

Project description:Flooding stress has a negative impact on the soybean cultivation in early growth stages. In order to understand the effect of aluminum oxide nanoparticles on the soybean growth under flooding stress, quantitative proteomics technique was used.

2015-08-31 | PXD002005 | Pride

Nuclear proteomics reavels the role of protein synthesis and chromatin in root tips of soybean under initial flooding stress

Project description:Flooding has a severe negative effect on cultivation in the early stage of soybean growth. To understand the mechanism in early-stage soybean responding to initial flooding stress, nuclear proteomic technique was used.

2017-04-03 | PXD002429 | Pride

Analysis of initial changes in the proteome of soybean root tip under flooding stress

2022-02-22 | PXD000689 | Pride

Quantitative proteomics reveals the effect of protein glycosylation in soybean root under flooding stress

Project description:Flooding stress has a negative impact on soybean cultivation because it severely impairs growth and development. To understand the flooding responsive mechanism in early stage soybeans, a glycoproteomic technique was used

2014-12-08 | PXD001350 | Pride

Temporary Organ Specific Quantitative Proteomic Analysis of Soybean under Flooding and Drought Stresses

Project description:To elucidate the mechanism of soybean responding to flooding and drought, organ specific proteomics and time course proteomics were carried out.

2015-10-06 | PXD001687 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data