Proteomics

Dataset Information

0

RNF4-knockdown and RNF4-TULIP identified proteins


ABSTRACT: In this project we aim to identify the spacific targets of the SUMO-Targeted Ubiquitin Ligase (STUBL) RNF4. For that, we combine the study of SUMOylation targets that are enriched after RNF4 knockdown with the use of Targeted Ubiquitin Ligases Identified by Proteomics (TULIP).

INSTRUMENT(S): Q Exactive

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Permanent Cell Line Cell

SUBMITTER: Román González-Prieto  

LAB HEAD: Alfred CO Vertegaal

PROVIDER: PXD005425 | Pride | 2017-11-23

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
Samplenumbering.xlsx Xlsx
peptides.txt Txt
proteinGroups.txt Txt
q100532b.raw Raw
q100532c.raw Raw
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Publications

The STUbL RNF4 regulates protein group SUMOylation by targeting the SUMO conjugation machinery.

Kumar Ramesh R   González-Prieto Román R   Xiao Zhenyu Z   Verlaan-de Vries Matty M   Vertegaal Alfred C O ACO  

Nature communications 20171127 1


SUMO-targeted ubiquitin ligases (STUbLs) mediate the ubiquitylation of SUMOylated proteins to modulate their functions. In search of direct targets for the STUbL RNF4, we have developed TULIP (targets for ubiquitin ligases identified by proteomics) to covalently trap targets for ubiquitin E3 ligases. TULIP methodology could be widely employed to delineate E3 substrate wiring. Here we report that the single SUMO E2 Ubc9 and the SUMO E3 ligases PIAS1, PIAS2, PIAS3, ZNF451, and NSMCE2 are direct RN  ...[more]

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