Dataset Information

Locus-specific Retention Predictor (LsRP)

ABSTRACT: LsRP based on amino acid locus information and Support Vector Regression can be used to predict peptide retention time in LC-MS experiments.

INSTRUMENT(S): TripleTOF 5600

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Hela Cell

SUBMITTER: Wenyuan Lu

LAB HEAD: Pengyuan Yang

PROVIDER: PXD005572 | Pride | 2017-04-10

REPOSITORIES: Pride

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Publications

Locus-specific Retention Predictor (LsRP): A Peptide Retention Time Predictor Developed for Precision Proteomics.

Lu Wenyuan W Liu Xiaohui X Liu Shanshan S Cao Weiqian W Zhang Yang Y Yang Pengyuan P

Scientific reports 20170317

The precision prediction of peptide retention time (RT) plays an increasingly important role in liquid chromatography-tandem mass spectrometry (LC-MS/MS) based proteomics. Owing to the high reproducibility of liquid chromatography, RT prediction provides promising information for both identification and quantification experiment design. In this work, we present a Locus-specific Retention Predictor (LsRP) for precise prediction of peptide RT, which is based on amino acid locus information and Sup ...[more]

PMID: 28303880

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			Action	DRS
	Code.rar	Other
	ExampleData.rar	Other
	LocusVectors.rar	Other
	hela-1.5ug-120.dat	Other
	hela-1.5ug-120.wiff	Wiff