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Associating Growth Conditions with Cellular Components (AG3C) in E. coli

ABSTRACT: This project makes in depth measurements of protein and rna gene expression of E. coli under various environmental conditions including glycerol, lactate, gluconate, NaCl and MgSO4.

INSTRUMENT(S): LTQ Orbitrap Elite

ORGANISM(S): Escherichia Coli

SUBMITTER: John Houser

LAB HEAD: Claus Wilke

PROVIDER: PXD005721 | Pride | 2017-04-21

REPOSITORIES: Pride

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			Action	DRS
	E_coli_REL606_MQ_contam_fwd_rv.fasta	Fasta
	MURI_106_1a_11042015_10xdil.E_coli_REL606_MQ_contam_fwd_rv.tandemK.out	Other
	MURI_106_1a_11042015_10xdil.E_coli_REL606_MQ_contam_fwd_rv.tandemK.xml	Xml
	MURI_106_1a_11042015_10xdil.mzXML	Mzxml
	MURI_106_1a_11042015_10xdil.mzXML..comet.pep.xml	Pepxml

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Publications

The E. coli molecular phenotype under different growth conditions.

Caglar Mehmet U MU Houser John R JR Barnhart Craig S CS Boutz Daniel R DR Carroll Sean M SM Dasgupta Aurko A Lenoir Walter F WF Smith Bartram L BL Sridhara Viswanadham V Sydykova Dariya K DK Vander Wood Drew D Marx Christopher J CJ Marcotte Edward M EM Barrick Jeffrey E JE Wilke Claus O CO

Scientific reports 20170418

Modern systems biology requires extensive, carefully curated measurements of cellular components in response to different environmental conditions. While high-throughput methods have made transcriptomics and proteomics datasets widely accessible and relatively economical to generate, systematic measurements of both mRNA and protein abundances under a wide range of different conditions are still relatively rare. Here we present a detailed, genome-wide transcriptomics and proteomics dataset of E. ...[more]

PMID: 28417974

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