Proteomics

Dataset Information

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Proteome, Metabolite, and Cell Wall Profiling of an Elongating Rice Stem Internode

ABSTRACT: LC-MS/MS proteomics data was generated as part of an Isobaric tag (iTRAQ 4-plex) labeling experiment conducted on Oryza sativa ssp. japonica cv. Kitaake.

INSTRUMENT(S): Q Exactive

ORGANISM(S): Oryza Sativa (rice)

SUBMITTER: Matthew Monroe  

LAB HEAD: Laura E. Bartley

PROVIDER: PXD006536 | Pride | 2017-08-04

REPOSITORIES: pride

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Bart_Rice_iTRAQ_01_FT_19May16_Pippin_16-03-37.mgf Mgf
Bart_Rice_iTRAQ_01_FT_19May16_Pippin_16-03-37.pride.mgf.gz Mgf
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Bart_Rice_iTRAQ_01_FT_19May16_Pippin_16-03-37_msgfplus.mzid.gz Mzid
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Publications

Proteomics Coupled with Metabolite and Cell Wall Profiling Reveal Metabolic Processes of a Developing Rice Stem Internode.

Lin Fan F   Williams Brad J BJ   Thangella Padmavathi A V PAV   Ladak Adam A   Schepmoes Athena A AA   Olivos Hernando J HJ   Zhao Kangmei K   Callister Stephen J SJ   Bartley Laura E LE  

Frontiers in plant science 20170713

Internodes of grass stems function in mechanical support, transport, and, in some species, are a major sink organ for carbon in the form of cell wall polymers. This study reports cell wall composition, proteomic, and metabolite analyses of the rice elongating internode. Cellulose, lignin, and xylose increase as a percentage of cell wall material along eight segments of the second rice internode (internode II) at booting stage, from the younger to the older internode segments, indicating active c  ...[more]

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