Proteomics

Dataset Information

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A Proteomic Approach to Understanding the Pathogenesis of Idiopathic Macular Hole Formation


ABSTRACT: Idiopathic macular holes (IMH) are full-thickness defects of retinal tissue that cause severe vision loss due to disruption of the anatomic fovea. Abnormal vitreous traction is involved in the formation of macular holes. Both glial cells and hyalocytes contribute to epiretinal membrane formation in IMH. In order to gain further insight into the pathophysiology of IMH, we conducted a discovery phase investigation of the vitreous proteome in four patients with macular holes and six controls using one-dimensional gel fractionation and liquid chromatography-tandem mass spectrometry analyses on an Orbitrap Elite mass spectrometer. Of a total of 5912 vitreous proteins, 32 proteins had increased and 39 proteins had decreased expression in IMH compared with controls, using a false discovery rate approach with p-value <0.001 and q value <0.05. IMH was associated with increased expression of proteins in the complement pathway, α-2-macroglobulin, a major inducer of Müller glial cell migration, fibrinogen, and extracellular matrix proteins, and decreased expression of proteins involved in protein folding and actin filament binding. A proteomic approach revealed proteins and biological pathways that may be involved in the pathogenesis of IMH and could be targeted for future studies.

INSTRUMENT(S): Q Exactive

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Eye

DISEASE(S): Eye Disease

SUBMITTER: Pingbo Zhang  

LAB HEAD: Richard D. Semba

PROVIDER: PXD006687 | Pride | 2018-04-11

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
10_1.mgf Mgf
10_1.raw Raw
10_10.mgf Mgf
10_10.raw Raw
10_11.mgf Mgf
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Publications

A proteomic approach to understanding the pathogenesis of idiopathic macular hole formation.

Zhang Pingbo P   Zhu Min M   Zhao Yuming Y   Qian Jiang J   Dufresne Craig C   Turner Randi R   Semba Richard D RD   Solomon Sharon D SD  

Clinical proteomics 20171115


Idiopathic macular holes (IMH) are full-thickness defects of retinal tissue that cause severe vision loss due to disruption of the anatomic fovea. Abnormal vitreous traction is involved in the formation of macular holes. Both glial cells and hyalocytes contribute to epiretinal membrane formation in IMH. In order to gain further insight into the pathophysiology of IMH, we conducted a discovery phase investigation of the vitreous proteome in four patients with macular holes and six controls using  ...[more]

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