Proteomics

Dataset Information

0

Human bladder,colon,kidney,liver cancer LC MS/MS


ABSTRACT: We propose that enrichment of low-abundance proteins benefits MPs finding. ProteoMinerTM is an equalizing technique by reducing high-abundance proteins and enriching low-abundance proteins in biological liquids. With triton X-100/TBS buffer extraction, ProteoMinerTM enrichment and peptide fractionation, 25 MPs with 73 unique peptides were identified from four human tissues, including 10 membrane proteins and 6 nucleus proteins. Then 18 MPs were confirmed with at least 2 unique peptide identification and 6 MPs were confirmed with 1 unique peptide identification by PRM assay. Hence these results demonstrated ProteoMinerTM as a powerful means in discovery of MPs.

INSTRUMENT(S): Q Exactive HF

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Liver

SUBMITTER: He Yanbin  

LAB HEAD: Siqi Liu

PROVIDER: PXD006833 | Pride | 2017-10-02

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
bladder_1.dat Other
bladder_1.dat-pride.pride.mgf.gz Mgf
bladder_1.dat-pride.pride.mztab.gz Mztab
bladder_1.dat-pride.xml.gz Xml
bladder_1_2.dat Other
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Publications

Digging More Missing Proteins Using an Enrichment Approach with ProteoMiner.

Li Siqi S   He Yanbin Y   Lin Zhilong Z   Xu Shaohang S   Zhou Ruo R   Liang Feng F   Wang Jian J   Yang Huanming H   Liu Siqi S   Ren Yan Y  

Journal of proteome research 20171026 12


Human Proteome Project (HPP) aims at mapping entire human proteins with a systematic effort upon all the emerging techniques, which would enhance understanding of human biology and lay a foundation for development of medical applications. Until now, 2563 missing proteins (MPs, PE2-4) are still undetected even using the most sensitive approach of protein detection. Herein, we propose that enrichment of low-abundance proteins benefits MPs finding. ProteoMiner is an equalizing technique by reducing  ...[more]

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