Proteomics

Dataset Information

0

Global proteome profile of Elizabethkingia meningoseptica: an opportunistic nosocomial pathogen

ABSTRACT: Elizabethkingia meningoseptica previously known as Chryseobacteriummeningosepticum is a gram-negative bacillus, commonly encountered in hospital environment. The pathogen is highly prevalent in hospital acquired neonatal meningitis. We performed unbiased global proteomic profiling and Proteogenomics analysis of E meningoseptica using shotgun proteomic sequencing approach. In all, we report peptide level evidence for 2796 annotated proteins. In addition, proteogenomic analysis of GSSPs resulted in the identification of four novel genes and revised existing annotation of seven genes. This database will serve as a crucial tool for future studies such as drug and vaccine design.

INSTRUMENT(S): LTQ Orbitrap

ORGANISM(S): Elizabethkingia Meningoseptica

SUBMITTER: Keshava Prasad T. S.  

LAB HEAD: T. S. Keshava Prasad

PROVIDER: PXD007661 | Pride | 2020-02-17

REPOSITORIES: Pride

Json Xml

Dataset's files

Source:
Action DRS
EM_IG_1.raw Raw
EM_IG_10.raw Raw
EM_IG_11.raw Raw
EM_IG_12.raw Raw
EM_IG_13.raw Raw
Items per page:
1 - 5 of 49
altmetric image

Publications

Global Proteome Profiling Reveals Drug-Resistant Traits in <i>Elizabethkingia meningoseptica</i>: An Opportunistic Nosocomial Pathogen.

Agrawal Archana A   Ravikumar Raju R   Varun Chakrakodi N CN   Kumar Manish M   Chatterjee Oishi O   Advani Jayshree J   Gopalakrishnan Lathika L   Nagaraj Sowmya S   Mohanty Varshasnata V   Patil Arun H AH   Sreeramulu Bhuvaragavan B   Malik Aubid A   Pinto Sneha M SM   Prasad Thottethodi Subrahmanya Keshava TSK  

Omics : a journal of integrative biology 20190522 6

<i>Elizabethkingia meningoseptica</i> is Gram-negative, rod-shaped opportunistic bacterial pathogen increasingly reported in hospital-acquired outbreaks. This bacterium is well known to thrive in the hospital environment. One of the leading causes of meningitis in pediatric and immune-compromised patients, <i>E. meningoseptica</i> has been noted as a "pathogen of interest" in the context of nosocomial diseases associated with device-related infections in particular. This pathogen's multidrug-res  ...[more]

Similar Datasets

Proteomics MS-based identification of small proteins in Campylobacter jejuni
2024-05-23 | PXD036790 | Pride
Proteomics Small Proteome of Haloferax volcanii - Proteogenomic database search strategy
2023-02-01 | PXD031691 | Pride
Proteomics Large-scale discovery of non-canonical peptides in monocot and dicot plants through an integrated peptidogenomic pipelineLarge-scale discovery of non-canonical peptides in monocot and dicot plants through an integrated peptidogenomic pipeline
2020-08-11 | PXD017081 | Pride
Proteomics Large-scale discovery of non-canonical peptides in monocot and dicot plants through an integrated peptidogenomic pipeline
2020-08-11 | PXD017080 | Pride
Proteomics Readthrough Events in Plants Reveal Unprecedented Plasticity of Stop Codons
2024-02-02 | PXD035958 | Pride
Proteomics Readthrough Events in Plants Reveal Unprecedented Plasticity of Stop Codons
2024-02-02 | PXD038762 | Pride
Proteomics Oncogene-dependent sloppiness in mRNA translation
2021-09-28 | PXD022707 | Pride
Proteomics A Unique Ribosome Signature Reveals bacterium Translation Initiation Sites
2017-08-09 | PXD005579 | Pride
Proteomics A differential proteomics pipeline for unsequenced species
2016-04-29 | PXD003625 | Pride
Proteomics Muscle biopsies from human neuromuscular diseases with dystrophic, inflammatory and myopathic pathology reveal common alterations in mitochondrial function
2016-04-04 | PXD002760 | Pride