Proteomics

Dataset Information

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Allele-specific alterations in the peptidome underlie the joint association of HLA-A*29:02 and Endoplasmic Reticulum Aminopeptidase 2 (ERAP2) with Birdshot Chorioretinopathy


ABSTRACT: Birdshot chorioretinopathy (BSCR) is a rare inflammatory eye disease very strongly associated with HLA-A*29:02, with >95% of patients carrying this allele. BSCR is also associated with endoplasmic reticulum aminopeptidase (ERAP)2, an enzyme involved in processing HLA class I ligands. We analyzed the relationship between both risk factors, to address the basis for their joint association with BSCR. Label-free quantitative mass spectrometry was used to characterize the effects of ERAP2 on the A*29:02-bound peptidome. An ERAP2-negative cell line was transduced with lentiviral constructs containing GFP or GFP-ERAP2, and the A*29:02 peptidomes from mock- and ERAP2-transduced cells were compared. A similar analysis was performed with two A*29:02-positive, ERAP1-concordant, cell lines differing in their expression or not of ERAP2. In both comparisons the presence of ERAP2 affected the following features of the A*29:02 peptidome: 1) Length, with increased amounts of peptides >9-mers, and 2) N-terminal residues, with less ERAP2-susceptible and more hydrophobic ones. The paradoxical effects on peptide length suggest that unproductive binding to ERAP2 might protect some peptides from over-trimming. The influence on N-terminal residues is consistent with a double effect of ERAP2: a direct one on peptide trimming and improved processing in concert with ERAP1. The alterations in the A*29:02 peptidome suggest that the association of ERAP2 with BSCR is through its effects on peptide processing. These differ from those on the ankylosing spondylitis-associated HLA-B*27. Thus, ERAP2 alters the peptidome of distinct HLA molecules as a function of their specific binding preferences, influencing different pathological outcomes in an allele-dependent way.

INSTRUMENT(S): Q Exactive

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Permanent Cell Line Cell

DISEASE(S): Birdshot Chorioretinopathy

SUBMITTER: Eilon Barnea  

LAB HEAD: Arie Admon

PROVIDER: PXD007679 | Pride | 2018-05-17

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
50198-50206-A29-Lopez-DC-18-12-16.rar Other
A29-19-3-18.zip Other
MaxQuant_1.5.0.25.zip Other
MaxQuant_1.5.8.3.zip Other
Seq50198_QE2.raw Raw
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Publications

Allele-specific Alterations in the Peptidome Underlie the Joint Association of HLA-A*29:02 and Endoplasmic Reticulum Aminopeptidase 2 (ERAP2) with Birdshot Chorioretinopathy.

Sanz-Bravo Alejandro A   Martín-Esteban Adrian A   Kuiper Jonas J W JJW   García-Peydró Marina M   Barnea Eilon E   Admon Arie A   López de Castro José A JA  

Molecular & cellular proteomics : MCP 20180516 8


Virtually all patients of the rare inflammatory eye disease birdshot chorioretinopathy (BSCR) carry the HLA-A*29:02 allele. BSCR is also associated with endoplasmic reticulum aminopeptidase 2 (ERAP2), an enzyme involved in processing HLA class I ligands, thus implicating the A*29:02 peptidome in this disease. To investigate the relationship between both risk factors we employed label-free quantitative mass spectrometry to characterize the effects of ERAP2 on the A*29:02-bound peptidome. An ERAP2  ...[more]

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