Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Wine grape iTRAQ

ABSTRACT: iTRAQ proteomics analysis in roots of wine grape (Beida) during overwintering have been revealed that low temperature induced differentially proteins accumulated.

INSTRUMENT(S): 4700 Proteomics Analyzer

ORGANISM(S): Vitis Vinifera (grape)

TISSUE(S): Root

SUBMITTER: Meng-Fei LI

LAB HEAD: Mengfei Li

PROVIDER: PXD009435 | Pride | 2022-02-28

REPOSITORIES: Pride

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	Mudpit_PGT2-31.raw (F003268).mzid_Mudpit_PGT2-31.raw_(F003268).pride.mgf.gz	Mzid
	Mudpit_PGT2-31.raw (F003268).pride.mztab.gz	Mztab
	Mudpit_PGT2-31.rawF003268.mzid.gz	Mzid
	Mudpit_PGT2-31.rawF003268.mzid_Mudpit_PGT2-31.raw_F003268.MGF	Mzid
	PGT2-31.raw	Raw

Items per page:

1 - 5 of 14

Similar Datasets

Wine grape iTRAQ

Project description:iTRAQ proteomics analysis in roots of wine grape (Beida) during overwintering have been revealed that low temperature induced differentially proteins accumulated.

2022-05-19 | PXD009837 | Pride

wine grape

Project description:wine grape Raw sequence reads

| PRJNA750856 | ENA

Grape Bud Dormancy -Vitis vinifera

Project description:Bud endodormancy induction response of two genotypes (Seyval, a hybrid white wine grape and Vitis riparia, PI588259, a native North American grape species) was compared under long (15 h) and short (13 h) photoperiods. Proteins were extracted from both genotypes for all time points and experimental conditions. The proteins were separaed by 2D-PAGE, trypsin digested, and the peptides identified with a MALDI-TOF-TOF mass spectrometer. A master gel was made and mapped with all proteins from both genotypes. The proteins were identified by matching the peptide sequences against the 8X Vitis vinifera grape genome in NCBI. This study was funded by NSF grant DBI064755 and is the result of a collaboration between Dr. Anne Fennell at South Dakota State University and Dr. Grant R. Cramer at the University of Nevada, Reno.

2010-08-09 | PRD000169 | Pride

Transcriptomic response of Saccharomyces cerevisiae in mixed-culture wine fermentation with Hanseniaspora guilliermondii

2015-12-24 | GSE66521 | GEO

Transcription profiling of healthy human volunteers after consumin red wine vs. controls to investigate the cardioprotective effect of red wine

Project description:The aim of this study was to measure the influence of beverages on blood gene expression. We wanted to explore the underlying mechanisms of the cardioprotective effects of red wine. Experiment Overall Design: Six healthy volunteers participated in this randomized controlled cross-over experiment. On 4 independent days they had 4 different beverages (500mL each: grape juice, red wine, 40g diluted ethanol, water). Blood samples were taken at baseline, 1, 2, 4, 12 hours after the drink together with standardized nutrition. RNA of 120 PBL samples was hybridized on Affymetrix microarrays. Three sources of variations were examined: individual, time and beverage.

2007-11-01 | E-GEOD-3846 | biostudies-arrayexpress

The metagenomic relevant the occurrence of root rot disease in wine grape

Project description:The metagenomic relevant the occurrence of root rot disease in wine grape

| PRJNA1153634 | ENA

RNA-Seq data of Vitis vinifera cv. Furmint berry samples (Tokaj wine region) exposed to noble rot

Project description:White grape (Vitis vinifera cv. Furmint) berry samples subjected to natural noble rot were collected in a vineyard in Mád, Hungary (Tokaj wine region). Raw data include grapevine and Botrytis cinerea sequence reads.

2021-11-25 | E-MTAB-11205 | biostudies-arrayexpress

Transcriptomic response of Saccharomyces cerevisiae in mixed-culture wine fermentation with Hanseniaspora guilliermondii

Project description:Natural grape-juice fermentations involve the sequential development of different yeast species which strongly influence the chemical and sensorial traits of the final product. In the present study,we aimed to examine the transcriptomic response of Saccharomyces cerevisiae to the presence of Hanseniaspora guilliermondii wine fermentation. Paralell fermentations were carried out in natural grape-juice using S. cerevisiae for both single and mixed culture with a H. guilliermondii strain. For RNA extraction, cells were collected at 24h, 48h and 96 h from both fermentations

2015-12-24 | E-GEOD-66521 | biostudies-arrayexpress

Transcriptional profiling of two muscadine grape cultivars ‘Carlos’ and ‘Noble’ to reveal new genes, gene regulatory networks, and pathways that involved in grape berry ripening

Project description:In commercial fruit production, synchronized ripening and stable shelf life are important properties. The loosely clustered or non-bunching muscadine grape has unrealized potential as a disease resistant cash crop, but requires repeated hand harvesting due to its unsynchronized or long or heterogeneous maturation period. Genomic research can be used to identify the developmental and environmental factors that control fruit ripening and postharvest quality. This study coupled the morphological, biochemical, and genetic variations between ‘Carlos’ and ‘Noble’ muscadine grape cultivars with RNA-sequencing analysis during berry maturation. The levels of antioxidants, anthocyanins, and titratable acids varied between the two cultivars during the ripening process. We also identified new genes, pathways, and regulatory networks that modulated berry ripening in muscadine grape. These findings may help develop a large-scale database of the genetic factors of muscadine grape ripening and postharvest profiles and allow the discovery of the factors underlying the ripeness heterogeneity at harvest. These genetic resources may allow us to combine applied and basic research methods in breeding to improve table and wine grape ripening uniformity, quality, stress tolerance, and postharvest handling and storage.

2022-08-09 | GSE203347 | GEO

Chilling requirement fulfillment in Vitis riparia overwintering buds

Project description:This study investigated changes in gene expression of controlled environment chilled (4C) grape overwintering buds as they accumulated from 0 to 2000 chilling hours. Keywords: time course, chilling, endodormancy release, axillary bud, grape

2009-06-03 | GSE9903 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data