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INTEGRATED MULTI-OMICS ANALYSES OF MAIZE REVEAL ROLES FOR AUTOPHAGIC RECYCLING IN PROTEOME REMODELING AND LIPID TURNOVER

ABSTRACT: The turnover of cytoplasmic material via autophagic encapsulation and delivery to vacuoles is essential for recycling cellular constituents, especially under nutrient-limiting conditions. To determine how cells/tissues rely on autophagy, we applied in-depth multi-omic analyses to study maize (Zea mays) autophagy mutants grown under nitrogen-replete and starvation conditions. Surprisingly, broad alterations in the leaf metabolome were evident in plants missing the core autophagy component ATG12 even without stress, particularly affecting products of lipid turnover and secondary metabolites, which were underpinned by substantial changes in the transcriptome and/or proteome. Cross-comparison of mRNA and protein abundances allowed for the identification of organelles, protein complexes, and individual proteins targeted for selective autophagic clearance, and revealed several processes controlled by this catabolism. Collectively, we describe a facile proteomic strategy to survey autophagic substrates, and show that autophagy has a greater than expected influence in sculpting plant proteomes and membranes both before and during nitrogen stress.

INSTRUMENT(S): Q Exactive

ORGANISM(S): Zea Mays (maize)

TISSUE(S): Plant Cell, Leaf

SUBMITTER: Fionn McLoughlin

LAB HEAD: Richard D Vierstra

PROVIDER: PXD009627 | Pride | 2018-10-08

REPOSITORIES: Pride

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			Action	DRS
	2ndleaftotalset.msf	Msf
	2ndleaftotalset.pep.xml	Pepxml
	4thleafV3.msf	Msf
	4thleafV3.pep.xml	Pepxml
	Leaf2_W22_1_-N_exclusion1.raw	Raw

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