Dataset Information

Pacific Ocean metaproteomics, METZYME KM1128

ABSTRACT: Global metaproteomic analyses of microbial biomass from the upper water column of the Central Pacific Ocean. This dataset was used as a discovery dataset to identify peptide biomarkers for cyanobacterial populations for use in targeted metaproteomic calibrated multiple reaction monitoring (MRM) analyses published in in Saito et al., 2014 and 2015. Saito, M. A., McIlvin, M. R., Moran, D. M., Goepfert, T. J., DiTullio, G. R., Post, A. F., and Lamborg, C. H.: Multiple nutrient stresses at intersecting Pacific Ocean biomes detected by protein biomarkers, Science, 345, 1173-1177, 2014. Saito, M. A., Dorsk, A., Post, A. F., McIlvin, M., Rappé, M. S., DiTullio, G., and Moran, D.: Needles in the Blue Sea: Sub‐Species Specificity in Targeted Protein Biomarker Analyses Within the Vast Oceanic Microbial Metaproteome, PROTEOMICS, 15, 3521-3531, 2015.

INSTRUMENT(S): Orbitrap Fusion

ORGANISM(S): Environmental Samples

TISSUE(S): Photosynthetic Cell

DISEASE(S): Disease Free

SUBMITTER: Matthew McIlvin

LAB HEAD: Makoto Saito

PROVIDER: PXD009712 | Pride | 2019-02-12

REPOSITORIES: Pride

ACCESS DATA

Dataset's files

Source:

			Action	DRS
	st12_040m_CID.mzid.gz	Mzid
	st12_040m_CID.mzid_st12_040m_CID.MGF	Mzid
	st12_040m_CID.mzid_st12_040m_CID.pride.mgf.gz	Mzid
	st12_040m_CID.pride.mztab.gz	Mztab
	st12_040m_CID.raw	Raw

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Publications

Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing.

Saito Mak A MA Bertrand Erin M EM Duffy Megan E ME Gaylord David A DA Held Noelle A NA Hervey William Judson WJ Hettich Robert L RL Jagtap Pratik D PD Janech Michael G MG Kinkade Danie B DB Leary Dagmar H DH McIlvin Matthew R MR Moore Eli K EK Morris Robert M RM Neely Benjamin A BA Nunn Brook L BL Saunders Jaclyn K JK Shepherd Adam I AI Symmonds Nicholas I NI Walsh David A DA

Journal of proteome research 20190312 4

Ocean metaproteomics is an emerging field enabling discoveries about marine microbial communities and their impact on global biogeochemical processes. Recent ocean metaproteomic studies have provided insight into microbial nutrient transport, colimitation of carbon fixation, the metabolism of microbial biofilms, and dynamics of carbon flux in marine ecosystems. Future methodological developments could provide new capabilities such as characterizing long-term ecosystem changes, biogeochemical rea ...[more]

PMID: 30702898

Dataset Information

Pacific Ocean metaproteomics, METZYME KM1128

Dataset's files

Publications

Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing.

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