Dataset Information

Partial-nitritation anammox reactor

ABSTRACT: Identify and characterize two distinct communities, the aerobic community and the anaerobic community in the partial nitritation/anammox reactors using metaproteomics approach

INSTRUMENT(S): Q Exactive

ORGANISM(S): Brassica Napus (rape)

SUBMITTER: Xu Zhang

LAB HEAD: Daniel Figeys

PROVIDER: PXD009787 | Pride | 2019-07-26

REPOSITORIES: pride

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Dataset's files

Source:

			Action	DRS
	Anammox_taxonomy_guided_database_combined.fasta	Fasta
	ID_Quant_results.zip	Other
	Xu_20180222_A1.raw	Raw
	Xu_20180222_A1_180225034341.raw	Raw
	Xu_20180222_A1_180225083018.raw	Raw

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Publications

Exploring the effects of operational mode and microbial interactions on bacterial community assembly in a one-stage partial-nitritation anammox reactor using integrated multi-omics.

Wang Yulin Y Niu Qigui Q Zhang Xu X Liu Lei L Wang Yubo Y Chen Yiqiang Y Negi Mishty M Figeys Daniel D Li Yu-You YY Zhang Tong T

Microbiome 20190828 1

<h4>Background</h4>The metabolic capacities of anammox bacteria and associated microbial community interactions in partial-nitritation anammox (PNA) reactors have received considerable attention for their crucial roles in energy-efficient nitrogen removal from wastewater. However, a comprehensive understanding of how abiotic and biotic factors shape bacterial community assembly in PNA reactors is not well reported.<h4>Results</h4>Here, we used integrated multi-omics (i.e., high-throughput 16S rR ...[more]

PMID: 31462278

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Project description:The community composition (in terms of abundance, distribution and contribution of diverse clades) of bacteria involved in nitrogen transformations in the oxygen minimum zones may be related to the rates of fixed N loss in these systems. The abundance of both denirifying and anammox bacteria, and the assemblage composition of denitrifying bacteria were investigated in the Eastern Tropical South Pacific and the Arabian Sea using assays based on molecular markers for the two groups of bacteria. The abundance and distribution of bacteria associated with the fixed N removal processes denitrification and anammox were investigated using quantitative PCR for genes encoding nitrite reductase (nirK and nirS) in denitrifying bacteria and hydrazine oxidase(hzo) and 16S rRNA genesin anammox bacteria. All of these genes had depth distributions with maxima associated with the secondary nitrite maximum in low oxygen waters. NirS was mch more abundant than nirK, and much more abundant than the 16S rRNA gene from anammox bacteria. The ratio of hzo:16S rRNA for anammox was low and variable implying greater unexplored diversity in the the hzo gene. Assemblage composition of the abundant nirS-type denitrifiers was evaluated using a funcitonal gene microarray. Of the nirS archetypes represented on the microarray, very few occurred speficically in one region or depth interval, but the assemblages varied significantly. Community composition of denitrifiers based on microarray analysis of the nirS gene was most different between geographical regions. Within each region, the surface layer and OMZ assemblages clustered distinctly. Thus, in addition to spatial and temporal variation in denitrificaiton and anammox rates, both microbial abundance and community composition also vary between OMZ regions and depths. Two color array (Cy3 and Cy5): the universal standard 20-mer oligo is printed to the slide with a 70-mer oligo (an archetype). Environmental DNA sequences (fluoresced with Cy3) within 15% of the 70-mer conjugated to a 20-mer oligo (fluoresced with Cy5) complementary to the universal standard will bind to the oligo probes on the array. Signal is the ratio of Cy3 to Cy5. Three replicate probes were printed for each archetype. Two replicate arrays were run on duplicate targets.