Dataset Information

Differential view on the bile acids stress response of Clostridioides difficile_longterm stress

ABSTRACT: In this study, we aimed at the characterization of C. difficile’s stress response to the main four human bile acids. Although, a phenotypically description of growth differences upon challenge with different bile acids has been described (Lewis 2016, Thanissery 2017), there is no information on the adaptation of gene expression available. We employed a comprehensive proteomics approach to record stress signatures of the unconjugated bile acids CA, CDCA, DCA and LCA during long-term-stress conditions and could depict a general stress response concerning all four bile acids, but also specific responses to only a single or a few of the different bile acids. Our results are a starting point for the understanding of how the individual bile acids cocktail of a patient can decide on the outcome of a C. difficile infection

INSTRUMENT(S): Synapt MS

ORGANISM(S): Peptoclostridium Difficile (strain 630) (clostridium Difficile)

SUBMITTER: Daniela Zuehlke

LAB HEAD: Kathrin Riedel

PROVIDER: PXD010525 | Pride | 2019-02-09

REPOSITORIES: Pride

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Dataset's files

Source:

			Action	DRS
	171018_S1_U2_CW_Cdiff_DCA_BRI_6ul_IMSe_ST1s_1.raw.zip	Raw
	171018_S1_U2_CW_Cdiff_DCA_BRI_6ul_IMSe_ST1s_1_20171019120420.zip	Other
	171018_S1_U2_CW_Cdiff_DCA_BRI_6ul_IMSe_ST1s_4.raw.zip	Raw
	171018_S1_U2_CW_Cdiff_DCA_BRI_6ul_IMSe_ST1s_4_20171023151248.zip	Other
	171018_S1_U2_CW_Cdiff_DCA_BRI_6ul_IMSe_ST1s_5.raw.zip	Raw

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Publications

Differential View on the Bile Acid Stress Response of Clostridioides difficile.

Sievers Susanne S Metzendorf Nicole G NG Dittmann Silvia S Troitzsch Daniel D Gast Viola V Tröger Sophie Marlen SM Wolff Christian C Zühlke Daniela D Hirschfeld Claudia C Schlüter Rabea R Riedel Katharina K

Frontiers in microbiology 20190218

Clostridioides difficile is an intestinal human pathogen that uses the opportunity of a depleted microbiota to cause an infection. It is known, that the composition of the intestinal bile acid cocktail has a great impact on the susceptibility toward a C. difficile infection. However, the specific response of growing C. difficile cells to diverse bile acids on the molecular level has not been described yet. In this study, we recorded proteome signatures of shock and long-term ...[more]

PMID: 30833939

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Project description:In order to successfully survive in and to colonize the gastrointestinal tract, bacteria need to develop strategies to overcome bile acid stress. The most prominent bile acids are the primary bile acids cholic acid (CA) and chenodeoxycholic acid (CDCA) as well as the secondary bile acid deoxycholic acid (DCA). In this study, we investigated the stress response of E. faecalis and E. faecium to sublethal concentrations of these three bile acids on the proteome level using DIA-MS. As both species showed similar IC50 for DCA and CDCA in growth experiments and both were highly resistant towards CA, we assumed similar changes to their protein expression profiles. Moreover, we investigated proteomic differences of E. faecalis grown under aerobic or microaerophilic conditions. Our findings showed similarities, but also species-specific variations in the response to the different bile acids, which reveal potential differences in the adaptation process. DCA and CDCA had a strong effect on down-expression of proteins involved in translation, transcription and replication in E. faecalis, but to a lesser extent in E. faecium. Proteins commonly significantly altered in their expression in all bile acid treated samples were identified for both species and represent a “general bile acid response”. Among these, ABC-transporters, multi-drug transporters and proteins related to cell wall biogenesis were up-expressed in both species and thus seem to play an essential role in bile acid resistance. Specific for all E. faecalis samples was the up-expression of several subunits of a V-type ATPase and the down-expression of proteins involved in pyruvate-, citrate- and folate metabolism. Most of the differentially expressed proteins were also identified when E. faecalis was incubated with low levels of DCA at microaerophilic conditions in comparison to aerobic conditions, indicating that adaptations to bile acids and to a microaerophilic atmosphere can occur simultaneously.

Dataset Information

Differential view on the bile acids stress response of Clostridioides difficile_longterm stress

Dataset's files

Publications

Differential View on the Bile Acid Stress Response of <i>Clostridioides difficile</i>.

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