Proteomics

Dataset Information

0

Identification of a chondroitin sulfate linkage region trisaccharide


ABSTRACT: Here, using LC-MS/MS, we describe for the first time a linkage region trisaccharide comprising [-GlcUA-Gal-Xyl-O-] as an alternative point of entry for glycosaminoglycan (GAG) biosynthesis. The trisaccharide was identified in the proteoglycan bikunin from urine of human healthy donors present as a disulfated pentasaccharide, [deltaHexUA-GalNAc(S)-GlcUA-Gal(S)-Xyl-O-] after chondroitinase ABC degradation. Furthermore, it was identified in chondroitin sulfate primed on xylosides isolated from human cell lines, present as the corresponding disulfated pentasaccharide after chondroitinase ABC degradation.

INSTRUMENT(S): Orbitrap Fusion, LTQ Orbitrap Elite

ORGANISM(S): Homo Sapiens (human)

SUBMITTER: Egor Vorontsov  

LAB HEAD: Göran Larson

PROVIDER: PXD011855 | Pride | 2019-02-25

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
Elite_GAG_180227_23.raw Raw
Elite_GAG_180227_36.raw Raw
Fusion_150401_09.raw Raw
Fusion_150401_54.raw Raw
Fusion_150415_41.raw Raw
Items per page:
1 - 5 of 8
altmetric image

Publications

Identification of a non-canonical chondroitin sulfate linkage region trisaccharide.

Persson Andrea A   Nilsson Jonas J   Vorontsov Egor E   Noborn Fredrik F   Larson Göran G  

Glycobiology 20190501 5


It is generally accepted that the biosynthesis of chondroitin sulfate and heparan sulfate is proceeding from a common linkage region tetrasaccharide comprising GlcA-Gal-Gal-Xyl-O-. The linkage region can undergo various modifications such as sulfation, phosphorylation and sialylation, and as the methods for studying glycosaminoglycan structure have been developed and refined, the number of discovered modifications has increased. Previous studies on the linkage region and the glycosyltransferases  ...[more]

Similar Datasets

2018-05-07 | PXD009652 | Pride
2020-02-18 | PXD014504 | Pride
2015-10-02 | PXD002707 | Pride
2021-11-03 | PXD023362 | Pride
2005-03-01 | E-MEXP-222 | biostudies-arrayexpress
2012-12-31 | E-GEOD-35137 | biostudies-arrayexpress
2023-05-27 | E-MTAB-9262 | biostudies-arrayexpress
2005-12-01 | E-MEXP-245 | biostudies-arrayexpress
2012-12-31 | E-GEOD-35120 | biostudies-arrayexpress
2012-12-31 | E-GEOD-35121 | biostudies-arrayexpress