Proteomics

Dataset Information

0

Phosphoproteomics of endothelin signalling


ABSTRACT: Time resolved phosphorylation changes were measured the melanoma cell lines A2058 and UACC257. An endothelin B receptor knockout of UACC257 was processed in parallel. Protein abundance was also compared at the latest time point of the study (90 min) using DIA-SWATH

INSTRUMENT(S): TripleTOF 6600, LTQ Orbitrap Elite

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Melanocyte

SUBMITTER: Alexander Schäfer  

LAB HEAD: Ruedi Aebersold

PROVIDER: PXD012316 | Pride | 2019-10-09

REPOSITORIES: pride

Dataset's files

Source:
Action DRS
A2058_iprophet.pep.xml Pepxml
OpenSWATH_output.tsv Tabular
Phospho_DDA_A2058_0min_Ctr_1.mzXML.mzXML Mzxml
Phospho_DDA_A2058_0min_Ctr_2.mzXML.mzXML Mzxml
Phospho_DDA_A2058_0min_Ctr_3.mzXML.mzXML Mzxml
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Publications

Elucidating essential kinases of endothelin signalling by logic modelling of phosphoproteomics data.

Schäfer Alexander A   Gjerga Enio E   Welford Richard Wd RW   Renz Imke I   Lehembre Francois F   Groenen Peter Ma PM   Saez-Rodriguez Julio J   Aebersold Ruedi R   Gstaiger Matthias M  

Molecular systems biology 20190801 8


Endothelins (EDN) are peptide hormones that activate a GPCR signalling system and contribute to several diseases, including hypertension and cancer. Current knowledge about EDN signalling is fragmentary, and no systems level understanding is available. We investigated phosphoproteomic changes caused by endothelin B receptor (ENDRB) activation in the melanoma cell lines UACC257 and A2058 and built an integrated model of EDNRB signalling from the phosphoproteomics data. More than 5,000 unique phos  ...[more]

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