Proteomics

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Time-dependent analysis of Paenarthrobacter nicotinovorans pAO1 nicotine-related proteome


ABSTRACT: We used nanoLC–MS/MS in a shotgun proteomics approach in order to identify the proteins expressed by P. nicotinovorans in the presence of nicotine at 3 different time intervals: 7, 10 and 24 hours post inoculation. A total of 915 proteins grouped 584 non-redundant clusters in were identified with an FDR of 0.3% when P. nicotinovorans was grown in on citrate medium alone and on citrate supplemented 0.05% nicotine. The differences in protein expression pattens at different time intervals allows us have a more dynamic picture on how the nicotine catabolic pathway is activated and to related it to the appearance of the known metabolic intermediates.

INSTRUMENT(S): Xevo G2 Q-Tof

ORGANISM(S): Paenarthrobacter Nicotinovorans

SUBMITTER: Marius Mihasan  

LAB HEAD: Costel C. Darie

PROVIDER: PXD012577 | Pride | 2021-06-01

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
MM_040817_14.dat Other
MM_040817_16.dat Other
MM_051317_002.dat Other
MM_051317_004.dat Other
MM_051317_006.dat Other
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Publications

Time-Dependent Analysis of <i>Paenarthrobacter nicotinovorans</i> pAO1 Nicotine-Related Proteome.

Mihăşan Marius M   Boiangiu Răzvan Ştefan RŞ   Guzun Doina D   Babii Cornelia C   Aslebagh Roshanak R   Channaveerappa Devika D   Dupree Emmalyn E   Darie Costel C CC  

ACS omega 20210525 22


<i>Paenarthrobacter nicotinovorans</i> is a soil Gram-positive nicotine-degrading microorganism (NDM) that harbors a 165 kb pAO1 catabolic megaplasmid. The nicotine catabolic genes on pAO1 have been sequenced, but not all the details on the regulation and interplay of this pathway with the general metabolism of the cell are available. To address this issue at the protein level, a time-based shotgun proteomics study was performed. <i>P. nicotinovorans</i> was grown in the presence or absence of n  ...[more]

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