Dataset Information

Plant Cell Wall Proteomics: A Focus on Monocot Species, Brachypodium distachyon, Saccharum spp. and Oryza sativa

ABSTRACT: We performed cell wall proteins (CWPs) extraction and analysis from sugarcane 7-month-old young and mature leaves and basal and apical internodes in order to point the differences regarding the cell wall proteome composition in these specific organs and diverse developmental stages. We used two different extraction methods for leaves CWPs: destructive and non-destructive. For internodes, only the non-destructive technique was used. The collection of CWPs was identified through LC-MS/MS analyses. Altogether, 110 sugarcane CWPs were identified and classified into eight functional categories. Sugarcane has one of the highest coverage of CWPs identified by mass spectrometry, reaching 283.

INSTRUMENT(S): Synapt MS

ORGANISM(S): Saccharum Hybrid Cultivar Sp80-3280

TISSUE(S): Plant Cell, Leaf, Shoot

SUBMITTER: Thais Cataldi

LAB HEAD: Carlos Alberto Labate, Maria Juliana Calderan-Rodrigues, Thaís Regiani Cataldi

PROVIDER: PXD012761 | Pride | 2019-04-24

REPOSITORIES: Pride

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Dataset's files

Source:

			Action	DRS
	cellwallpurification7montholdsugarcanematureleavesbioreplicate1_F001.zip	Other
	cellwallpurification7montholdsugarcanematureleavesbioreplicate1_F001_Spectrum.xml	Xml
	cellwallpurification7montholdsugarcanematureleavesbioreplicate1_F002.zip	Other
	cellwallpurification7montholdsugarcanematureleavesbioreplicate1_F002_Spectrum.xml	Xml
	cellwallpurification7montholdsugarcanematureleavesbioreplicate1_F003.zip	Other

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Publications

Plant Cell Wall Proteomics: A Focus on Monocot Species, Brachypodium distachyon, Saccharum spp. and Oryza sativa.

Calderan-Rodrigues Maria Juliana MJ Guimarães Fonseca Juliana J de Moraes Fabrício Edgar FE Vaz Setem Laís L Carmanhanis Begossi Amanda A Labate Carlos Alberto CA

International journal of molecular sciences 20190423 8

Plant cell walls mostly comprise polysaccharides and proteins. The composition of monocots' primary cell walls differs from that of dicots walls with respect to the type of hemicelluloses, the reduction of pectin abundance and the presence of aromatic molecules. Cell wall proteins (CWPs) differ among plant species, and their distribution within functional classes varies according to cell types, organs, developmental stages and/or environmental conditions. In this review, we go deeper into the fi ...[more]

PMID: 31018495

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Project description:Hypersensitive response-related programmed cell death (PCD) has been extensively analyzed in various plant–virus interactions. However, little is known about changes in gene expression associated with cell death caused by compatible viruses. The synergistic interaction of Potato virus X (PVX) with Plum pox virus (PPV) results in increased symptoms that lead to systemic necrosis (SN) in Nicotiana benthamiana. Here, we performed three transcriptome comparisons in response to i) a PVX recombinant virus expressing the helper component-proteinase (HC-Pro) gene from PPV that leads to SN, ii) a systemic incompatible interaction conferred by the Tobacco mosaic virus (TMV)-resistance gene N (SHR), and iii) the depletion of the PBE subunit of the proteasome that leads to PCD by virus induced gene silencing (VIGS Prot), at early and late stages of infection. Our analysis indicated that the SN response was clustered with SHR by the similarity of their overall gene expression profiles. However, the expression profiles of defence-related and hormone-responsive genes in response to SN were more closely related to the response to VIGS Prot than to that elicited by SHR. This suggests the potential contribution of proteasome dysfunction to the increase in pathogenicity observed in PVX-potyvirus infections We compare the gene expression profiles of Nicotiana benthamiana plants infected with either necrosis-inducing viruses or non-necrosis-inducing viruses, as follow: PVX/HCWT-infected plants versus plants infected with a PVX recombinant virus expressing a PPV HC-Pro mutant (PVX/HCLH) that was unable to induce the SN response (SN comparison), at 7 and 11 days postinoculation (dpi), (ii) TRV:NbPBE-silenced plants versus plants infected with the TRV empty vector (VIGS Prot comparison), at 4 and 8 days after infiltration (dpa), and (iii) TMV-GFP-infected, N-transgenic plants versus wild-type plants infected with TMV-GFP (SHR comparison), at 24 and 72 hours after temperature shift (hts). Per time and treatment, three independent biological replicates were used to monitor differences in gene expression between treatments

Dataset Information

Plant Cell Wall Proteomics: A Focus on Monocot Species, Brachypodium distachyon, Saccharum spp. and Oryza sativa

Dataset's files

Publications

Plant Cell Wall Proteomics: A Focus on Monocot Species, <i>Brachypodium distachyon</i>, <i>Saccharum</i> spp. and <i>Oryza sativa</i>.

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