Proteomics

Dataset Information

0

Papillary renal cell carcinomas rewire glutathione metabolism


ABSTRACT: Papillary renal cell carcinoma (pRCC) is a malignant kidney cancer with a prevalence of 7-20% of all renal cell tumors. Proteome and metabolome profiles of 19 pRCC and patient-matched healthy kidney controls and transcriptome data derived from TCGA were used to elucidate the regulation of metabolic pathways and underlying molecular mechanisms. Glutathione (GSH), a main reactive oxygen species (ROS) scavenger, was tremendously increased in pRCC type I, II, and metastatic type II and can be regarded as a new hallmark in this malignancy. Isotope tracing revealed an increased de novo synthesis rate of GSH and a glutamine addiction in pRCC derived cell lines. Furthermore, a rewiring of the main pathways involved in ATP and glucose synthesis was observed on the protein level: the abundance of enzymes involved in gluconeogenesis and of the respiratory chain was found to be significantly reduced in pRCC. In contrast, transcripts encoding for the respiratory chain were not regulated, which prompts for non-genetic profiling. The main molecular characteristics of pRCC are the increased GSH synthesis to cope with ROS stress, the deficient anabolic glucose synthesis, and the compromised oxidative phosphorylation, which could be exploited in novel anti-cancer strategies.

INSTRUMENT(S): Q Exactive

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Kidney

DISEASE(S): Papillary Renal Cell Carcinoma

SUBMITTER: Ayham Alahmad  

LAB HEAD: David Meierhofer

PROVIDER: PXD013523 | Pride | 2019-09-06

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
case1_kidney_typeIIM_1D.raw Raw
case1_kidney_typeIIM_SCX_2.raw Raw
case1_kidney_typeIIM_SCX_3.raw Raw
case1_kidney_typeIIM_SCX_4.raw Raw
case1_kidney_typeIIM_SCX_5.raw Raw
Items per page:
1 - 5 of 200
altmetric image

Publications

Papillary Renal Cell Carcinomas Rewire Glutathione Metabolism and Are Deficient in Both Anabolic Glucose Synthesis and Oxidative Phosphorylation.

Al Ahmad Ayham A   Paffrath Vanessa V   Clima Rosanna R   Busch Jonas Felix JF   Rabien Anja A   Kilic Ergin E   Villegas Sonia S   Timmermann Bernd B   Attimonelli Marcella M   Jung Klaus K   Meierhofer David D  

Cancers 20190903 9


Papillary renal cell carcinoma (pRCC) is a malignant kidney cancer with a prevalence of 7-20% of all renal tumors. Proteome and metabolome profiles of 19 pRCC and patient-matched healthy kidney controls were used to elucidate the regulation of metabolic pathways and the underlying molecular mechanisms. Glutathione (GSH), a main reactive oxygen species (ROS) scavenger, was highly increased and can be regarded as a new hallmark in this malignancy. Isotope tracing of pRCC derived cell lines reveale  ...[more]

Similar Datasets

2017-11-21 | PXD007633 | Pride
2009-09-04 | E-GEOD-10949 | biostudies-arrayexpress
2014-06-07 | E-GEOD-47787 | biostudies-arrayexpress
2021-09-22 | ST001920 | MetabolomicsWorkbench
2011-01-01 | E-GEOD-20400 | biostudies-arrayexpress
2020-10-23 | GSE159882 | GEO
2024-07-01 | GSE248348 | GEO
2024-10-02 | GSE262514 | GEO
2023-09-20 | GSE242095 | GEO
2022-05-27 | GSE178319 | GEO