Proteomics

Dataset Information

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Comprehensive cell surface proteomics defines markers of classical, intermediate and non-classical monocytes


ABSTRACT: Monocytes are a critical component of the cellular innate immune system, and can be subdivided into classical, intermediate and non-classical subsets on the basis of surface CD14 and CD16 expression. Classical monocytes play the canonical role of phagocytosis, and account for the majority of circulating cells. Intermediate and non-classical cells are known to exhibit varying levels of phagocytosis and cytokine secretion, and are differentially expanded in certain pathological states. Characterisation of cell surface proteins expressed by each subset is informative not only to improve understanding of phenotype, but also to provide biological insight into function. Here we use highly multiplexed Tandem-Mass-Tag (TMT)-based mass spectrometry with selective cell surface biotinylation to characterise the classical monocyte surface proteome, then interrogate the phenotypic differences between each monocyte subset to identify novel protein markers.

INSTRUMENT(S): Orbitrap Fusion Lumos

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Monocyte, Blood

SUBMITTER: Michael Weekes  

LAB HEAD: Michael Weekes

PROVIDER: PXD013832 | Pride | 2020-03-03

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
Monocytecellsurfacepeptides.xlsx Xlsx
Monocytecellsurfaceproteins_FINAL.xlsx Xlsx
PM_ClassicalMonocyte_Fraction1.raw Raw
PM_ClassicalMonocyte_Fraction2.raw Raw
PM_ClassicalMonocyte_Fraction3.raw Raw
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Publications

Comprehensive cell surface proteomics defines markers of classical, intermediate and non-classical monocytes.

Ravenhill Benjamin J BJ   Soday Lior L   Houghton Jack J   Antrobus Robin R   Weekes Michael P MP  

Scientific reports 20200312 1


Monocytes are a critical component of the cellular innate immune system, and can be subdivided into classical, intermediate and non-classical subsets on the basis of surface CD14 and CD16 expression. Classical monocytes play the canonical role of phagocytosis, and account for the majority of circulating cells. Intermediate and non-classical cells are known to exhibit varying levels of phagocytosis and cytokine secretion, and are differentially expanded in certain pathological states. Characteris  ...[more]

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