Proteomics

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SUMOylation regulates chromatin protein network and accessibility at glucocorticoid receptor-binding sites


ABSTRACT: Glucocorticoid receptor (GR) is an essential transcription factor (TF), controlling metabolism, development and immune responses. SUMOylation regulates chromatin occupancy and target gene expression of GR in a locus-selective manner, but the mechanism of regulation has remained elusive. Here, we show using selective isolation of chromatin-associated proteins that the protein network around chromatin-bound GR is affected by SUMOylation, with several nuclear receptor coregulators and chromatin modifiers being more avidly associated with SUMOylation-deficient than SUMOylation competent GR. This difference is reflected in our chromatin accessibility and gene expression data, showing that the SUMOylation-deficient GR is more potent in opening chromatin at glucocorticoid-regulated enhancers and inducing expression of their target loci. Our results thus show that SUMOylation determines GR specificity by regulating the chromatin protein network and accessibility at GR-driven enhancers. We speculate that a similar mechanism is utilized by many other SUMOylated TFs.

INSTRUMENT(S): Orbitrap Fusion

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Early Embryonic Cell

SUBMITTER: Gianluca Sigismondo  

LAB HEAD: Jorma J. Palvimo

PROVIDER: PXD015183 | Pride | 2021-09-08

REPOSITORIES: Pride

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Publications

SUMOylation regulates the protein network and chromatin accessibility at glucocorticoid receptor-binding sites.

Paakinaho Ville V   Lempiäinen Joanna K JK   Sigismondo Gianluca G   Niskanen Einari A EA   Malinen Marjo M   Jääskeläinen Tiina T   Varjosalo Markku M   Krijgsveld Jeroen J   Palvimo Jorma J JJ  

Nucleic acids research 20210201 4


Glucocorticoid receptor (GR) is an essential transcription factor (TF), controlling metabolism, development and immune responses. SUMOylation regulates chromatin occupancy and target gene expression of GR in a locus-selective manner, but the mechanism of regulation has remained elusive. Here, we identify the protein network around chromatin-bound GR by using selective isolation of chromatin-associated proteins and show that the network is affected by receptor SUMOylation, with several nuclear re  ...[more]

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