Dataset Information

Protein-protein interaction network dynamics induced by nitrogen starvation in Arabidopsis root membranes

ABSTRACT: With the information gathered through mass-shift- and correlation-analysis, we predict PPi on a proteomic scale and describe the results in form of a network. This experiment was done with 3 week old Arabidopsis thaliana wt seedlings grown in hydroponic culture (1/2 MS-Medium) under different nutritional conditions (N-Starvation, Full supply and Resupply after 15 min)

INSTRUMENT(S): Q Exactive

ORGANISM(S): Arabidopsis Thaliana (mouse-ear Cress)

TISSUE(S): Root

SUBMITTER: Max Gilbert

LAB HEAD: Waltraud Schulze

PROVIDER: PXD015841 | Pride | 2021-06-18

REPOSITORIES: Pride

ACCESS DATA

Dataset's files

Source:

Items per page:

1 - 5 of 153

Similar Datasets

Project description:Aspergillus fumigatus is an opportunistic fungal pathogen of the lungs resulting in both chronic and acute infection. The fungus interacts with numerous bacteria that compose the microflora of the lung including Pseudomonas aeruginosa and Klebsiella pneumoniae, both common isolates from Cystic fibrosis sputum. It is well documented that bacterial and fungal interactions both physically and through production of secreted products which can alter the growth and virulence of other species. The interaction with P. aeruginosa has been characterised previously indicating decreased growth and increased gliotoxin production in the presence of cells and the opposite when only exposed to culture filtrate. In our analysis exposure of cell free culture filtrate inhibited fungal growth and increased gliotoxin production. This was supported with proteomic analysis indicating reduction in 1,3-beta-glucanosyltransferase (-3.97 fold), methyl sterol monooxygenase erg25B (-2.9 fold) and Calcium/calmodulin dependent protein kinase (-4.2 fold) involved in fungal development. Coupled with increased expression of Glutathione S-transferase gliG (6.17 fold), non-ribosomal peptide synthase gliP (3.67 fold), O-methyltransferase gliM (3.5 fold), Gamma-glutamyl acyltransferase gliK (2.89 fold) and thioredoxin reductase gliT (2.33 fold) involved in Gliotoxin production indicate a possible shift towards secondary metabolism. Qualitative proteomic analysis of the bacterial supernatant also elucidates possible mechanisms for these alterations including physical interaction by Outer membrane protein A, High-affinity zinc uptake system protein ZnuA and Iron uptake system component EfeO reducing essential nutrient availability, enzymatic activity including Periplasmic serine endoprotease DegP-like and redox active proteins including Alkyl hydroperoxide reductase C. These proteomic alterations to the fungus could have implications for the severity of virulence in the context of coinfection and may impact disease progression.

			Action	DRS
	NRT1RM_F01.raw	Raw
	NRT1RM_F02.raw	Raw
	NRT1RM_F03.raw	Raw
	NRT1RM_F04.raw	Raw
	NRT1RM_F05.raw	Raw

Dataset Information

Protein-protein interaction network dynamics induced by nitrogen starvation in Arabidopsis root membranes

Dataset's files

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets